31 items (Colobus angolensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	POLR3K	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	POLR3F	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (291 aa)
	POLR3D	RNA polymerase III subunit D. (397 aa)
	POLR1C	RNA polymerase I and III subunit C. (350 aa)
	POLR2L	RNA polymerase II subunit L. (67 aa)
	TBP	TATA-box binding protein. (328 aa)
	POLR2F	RNA polymerase II subunit F. (158 aa)
	POLR2K	RNA polymerase II subunit K. (58 aa)
	POLR3B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1133 aa)
	POLR3A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1147 aa)
	GTF3C2	General transcription factor IIIC subunit 2. (910 aa)
	POLR3E	RNA polymerase III subunit E. (709 aa)
	CRCP	CGRP receptor component. (148 aa)
	LOC105501690	TFIIIC_sub6 domain-containing protein. (211 aa)
	POLR3GL	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (218 aa)
	POLR2H	RNA polymerase II subunit H. (175 aa)
	GTF3C5	General transcription factor IIIC subunit 5. (528 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)
	GTF3C3	General transcription factor IIIC subunit 3. (884 aa)
	ENSCANP00000014128	Uncharacterized protein. (196 aa)
	GTF3C1	General transcription factor IIIC subunit 1. (2109 aa)
	GTF3A	General transcription factor IIIA. (396 aa)
	POLR3C	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (534 aa)
	BRF1	BRF1 RNA polymerase III transcription initiation factor subunit. (584 aa)
	TBPL1	TATA-box binding protein like 1. (186 aa)
	POLR3H	RNA polymerase III subunit H. (204 aa)
	C11orf88	Chromosome 11 open reading frame 88. (195 aa)
	GTF3C6	General transcription factor IIIC subunit 6. (167 aa)
	GTF3C4	General transcription factor IIIC subunit 4. (799 aa)
	POLR3G	Uncharacterized protein. (187 aa)
	BDP1	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB. (2574 aa)

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP1	BRF1	ENSCANP00000002901	ENSCANP00000018631	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.996
BDP1	C11orf88	ENSCANP00000002901	ENSCANP00000023289	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	Chromosome 11 open reading frame 88.	0.938
BDP1	CRCP	ENSCANP00000002901	ENSCANP00000030260	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	CGRP receptor component.	0.972
BDP1	ENSCANP00000014128	ENSCANP00000002901	ENSCANP00000014128	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	Uncharacterized protein.	0.848
BDP1	GTF3A	ENSCANP00000002901	ENSCANP00000017119	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIA.	0.801
BDP1	GTF3C1	ENSCANP00000002901	ENSCANP00000016383	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 1.	0.882
BDP1	GTF3C2	ENSCANP00000002901	ENSCANP00000033232	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 2.	0.682
BDP1	GTF3C3	ENSCANP00000002901	ENSCANP00000008411	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 3.	0.975
BDP1	GTF3C4	ENSCANP00000002901	ENSCANP00000027301	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 4.	0.636
BDP1	GTF3C5	ENSCANP00000002901	ENSCANP00000007758	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 5.	0.874
BDP1	POLR1C	ENSCANP00000002901	ENSCANP00000038972	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase I and III subunit C.	0.954
BDP1	POLR2E	ENSCANP00000002901	ENSCANP00000007829	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase II subunit E.	0.915
BDP1	POLR2F	ENSCANP00000002901	ENSCANP00000036386	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase II subunit F.	0.939
BDP1	POLR2H	ENSCANP00000002901	ENSCANP00000007242	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase II subunit H.	0.940
BDP1	POLR2K	ENSCANP00000002901	ENSCANP00000036028	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase II subunit K.	0.929
BDP1	POLR2L	ENSCANP00000002901	ENSCANP00000038867	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase II subunit L.	0.888
BDP1	POLR3A	ENSCANP00000002901	ENSCANP00000034789	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.983
BDP1	POLR3B	ENSCANP00000002901	ENSCANP00000034796	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.968
BDP1	POLR3C	ENSCANP00000002901	ENSCANP00000018179	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.972
BDP1	POLR3D	ENSCANP00000002901	ENSCANP00000039816	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase III subunit D.	0.972