(30 nodes) Mannose type O-glycan biosynthesis network (Colobus angolensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FKTN	Uncharacterized protein. (459 aa)
	ENSCANP00000003727	Uncharacterized protein. (462 aa)
	POMGNT1	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-). (748 aa)
	POMGNT2	Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-). (580 aa)
	ST3GAL3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3; Belongs to the glycosyltransferase 29 family. (444 aa)
	FAM3A	Family with sequence similarity 3 member A. (244 aa)
	LARGE2	LARGE xylosyl- and glucuronyltransferase 2. (720 aa)
	B4GAT1	Beta-1,4-glucuronyltransferase 1. (415 aa)
	FAM3D	Family with sequence similarity 3 member D. (224 aa)
	FKRP	Fukutin related protein. (292 aa)
	ENSCANP00000016923	Uncharacterized protein. (201 aa)
	CRPPA	CDP-L-ribitol pyrophosphorylase A. (250 aa)
	POMT1	Protein O-mannosyltransferase 1. (757 aa)
	ENSCANP00000019541	MIR domain-containing protein. (177 aa)
	B4GALT1	Beta-1,4-galactosyltransferase 1. (331 aa)
	B4GALT2	Beta-1,4-galactosyltransferase 2. (394 aa)
	B4GALT3	Beta-1,4-galactosyltransferase 3. (393 aa)
	RXYLT1	Ribitol xylosyltransferase 1. (444 aa)
	POMT2	Protein O-mannosyltransferase 2. (744 aa)
	B3GALNT2	Beta-1,3-N-acetylgalactosaminyltransferase 2. (556 aa)
	FUT9	Fucosyltransferase 9. (359 aa)
	POMK	Protein O-mannose kinase. (350 aa)
	SDF2L1	Stromal cell derived factor 2 like 1. (210 aa)
	B3GAT2	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (323 aa)
	PIWIL4	Piwi like RNA-mediated gene silencing 4; Belongs to the argonaute family. (852 aa)
	FAM3C	Family with sequence similarity 3 member C. (227 aa)
	B3GAT1	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (334 aa)
	SDF2	Stromal cell derived factor 2. (211 aa)
	CHST10	Carbohydrate sulfotransferase. (356 aa)
	MGAT5B	Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B. (792 aa)

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3GALNT2	B4GAT1	ENSCANP00000028711	ENSCANP00000013979	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Beta-1,4-glucuronyltransferase 1.	0.660
B3GALNT2	CRPPA	ENSCANP00000028711	ENSCANP00000017222	Beta-1,3-N-acetylgalactosaminyltransferase 2.	CDP-L-ribitol pyrophosphorylase A.	0.404
B3GALNT2	ENSCANP00000003727	ENSCANP00000028711	ENSCANP00000003727	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Uncharacterized protein.	0.493
B3GALNT2	ENSCANP00000016923	ENSCANP00000028711	ENSCANP00000016923	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Uncharacterized protein.	0.470
B3GALNT2	FKRP	ENSCANP00000028711	ENSCANP00000016269	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Fukutin related protein.	0.568
B3GALNT2	FKTN	ENSCANP00000028711	ENSCANP00000007910	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Uncharacterized protein.	0.493
B3GALNT2	LARGE2	ENSCANP00000028711	ENSCANP00000009539	Beta-1,3-N-acetylgalactosaminyltransferase 2.	LARGE xylosyl- and glucuronyltransferase 2.	0.493
B3GALNT2	POMGNT1	ENSCANP00000028711	ENSCANP00000003611	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).	0.583
B3GALNT2	POMGNT2	ENSCANP00000028711	ENSCANP00000002844	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-).	0.938
B3GALNT2	POMK	ENSCANP00000028711	ENSCANP00000032010	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Protein O-mannose kinase.	0.935
B3GALNT2	POMT1	ENSCANP00000028711	ENSCANP00000018220	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Protein O-mannosyltransferase 1.	0.662
B3GALNT2	POMT2	ENSCANP00000028711	ENSCANP00000028166	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Protein O-mannosyltransferase 2.	0.599
B3GALNT2	RXYLT1	ENSCANP00000028711	ENSCANP00000027263	Beta-1,3-N-acetylgalactosaminyltransferase 2.	Ribitol xylosyltransferase 1.	0.661
B3GAT1	B3GAT2	ENSCANP00000037783	ENSCANP00000035671	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	0.821
B3GAT1	B4GALT1	ENSCANP00000037783	ENSCANP00000023903	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Beta-1,4-galactosyltransferase 1.	0.841
B3GAT1	B4GALT2	ENSCANP00000037783	ENSCANP00000024765	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Beta-1,4-galactosyltransferase 2.	0.841
B3GAT1	B4GALT3	ENSCANP00000037783	ENSCANP00000025179	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Beta-1,4-galactosyltransferase 3.	0.841
B3GAT1	CHST10	ENSCANP00000037783	ENSCANP00000038924	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Carbohydrate sulfotransferase.	0.887
B3GAT2	B3GAT1	ENSCANP00000035671	ENSCANP00000037783	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	0.821
B3GAT2	B4GALT1	ENSCANP00000035671	ENSCANP00000023903	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Beta-1,4-galactosyltransferase 1.	0.841