STRINGSTRING
YTHDC1 YTHDC1 FIP1L1 FIP1L1 PPP2R5E PPP2R5E NXT1 NXT1 PAPOLA PAPOLA SERAC1 SERAC1 ENSCANP00000015749 ENSCANP00000015749 C3orf67 C3orf67 HBS1L HBS1L SMG6 SMG6 WDR90 WDR90 ENSCANP00000016887 ENSCANP00000016887 UPF3A UPF3A ZC3H3 ZC3H3 RBMX2 RBMX2 WDR82 WDR82 MSL1 MSL1 CPSF1 CPSF1 ACIN1 ACIN1 LOC105507991 LOC105507991 LOC105512709 LOC105512709 DCLRE1A DCLRE1A RNMT RNMT ENSCANP00000020561 ENSCANP00000020561 WDR33 WDR33 COPS5 COPS5 BOLL BOLL RBM8A RBM8A PPP4R4 PPP4R4 CFAP20 CFAP20 PPP2R3C PPP2R3C NXT2 NXT2 PABPC3 PABPC3 CPSF2 CPSF2 ENSCANP00000035884 ENSCANP00000035884 PPP2R1B PPP2R1B MKRN1 MKRN1 DDX19B-2 DDX19B-2 RNPS1 RNPS1 DDX39B DDX39B FUS FUS SYMPK SYMPK ZC3H6 ZC3H6 CSTF1 CSTF1 GLE1 GLE1 MSI1 MSI1 DAZAP1 DAZAP1 UPF2 UPF2 SSU72 SSU72 ENSCANP00000033208 ENSCANP00000033208 PPP1R42 PPP1R42 PPP2R2D PPP2R2D RBBP6 RBBP6 TMEM240 TMEM240 NCBP2 NCBP2 PABPN1L PABPN1L PPP2R2C PPP2R2C MKRN3 MKRN3 PPP2R1A PPP2R1A JAZF1 JAZF1 PPP2CA PPP2CA PAPOLG PAPOLG INTS9 INTS9 ZC3H4 ZC3H4 ENSCANP00000028939 ENSCANP00000028939 RBM3 RBM3 PPP4R1 PPP4R1 PABPC4L PABPC4L PABPC1L PABPC1L NXF5 NXF5 PPP2CB PPP2CB CPSF6 CPSF6 RNGTT RNGTT PIH1D3 PIH1D3 CIRBP CIRBP EIF2A EIF2A DDX39A DDX39A NCBP1 NCBP1 NUDT21 NUDT21 MSI2 MSI2 RNF141 RNF141 LOC105517234 LOC105517234 ENSCANP00000025588 ENSCANP00000025588 TWF2 TWF2 ETF1 ETF1 PPP1CC PPP1CC GSPT1 GSPT1 PNN PNN CSTF3 CSTF3 INTS11 INTS11 CPSF4L CPSF4L PPP2R5C PPP2R5C MAGOH MAGOH PARP12 PARP12 PPP2R5A PPP2R5A ENSCANP00000022097 ENSCANP00000022097 CPSF3 CPSF3 PABPC4 PABPC4 ENSCANP00000021476 ENSCANP00000021476 ALYREF ALYREF CZIB CZIB CLP1 CLP1 SMG1 SMG1 ENSCANP00000015533 ENSCANP00000015533 TWF1 TWF1 PCF11 PCF11 LOC105512604 LOC105512604 ENSCANP00000007094 ENSCANP00000007094 PELO PELO CSTF2 CSTF2 PPP2R3A PPP2R3A WDR77 WDR77 ENSCANP00000013556 ENSCANP00000013556 TARDBP TARDBP PPP2R2B PPP2R2B ENSCANP00000013332 ENSCANP00000013332 MKRN2 MKRN2 PPP1CB PPP1CB UPF1 UPF1 ZGRF1 ZGRF1 MAGOHB MAGOHB LOC105500773 LOC105500773 NXF3 NXF3 ENSCANP00000011816 ENSCANP00000011816 SMG5 SMG5 UPF3B UPF3B PPP2R2A PPP2R2A DDX19B DDX19B MORN1 MORN1 DDX25 DDX25 SAP18 SAP18 SRRM1 SRRM1 LOC105509126 LOC105509126 ENSCANP00000037307 ENSCANP00000037307 ENSCANP00000037990 ENSCANP00000037990 FNBP4 FNBP4 NXF1 NXF1 TUT1 TUT1 ENSCANP00000039326 ENSCANP00000039326 ENSCANP00000039337 ENSCANP00000039337 PPP2R5B PPP2R5B EIF4A3 EIF4A3 TMEM223 TMEM223 TMEM258 TMEM258 LOC105513967 LOC105513967 DUSP11 DUSP11 ENSCANP00000004139 ENSCANP00000004139 LOC105510963 LOC105510963 ENSCANP00000008785 ENSCANP00000008785 POLDIP3 POLDIP3 ENSCANP00000008386 ENSCANP00000008386 PPP2R5D PPP2R5D ST13 ST13 PABPC1 PABPC1 PYM1 PYM1 NEDD1 NEDD1 LOC105520740 LOC105520740 ZC3H8 ZC3H8 SMG7 SMG7 CPSF4 CPSF4 ENSCANP00000005866 ENSCANP00000005866 ENSCANP00000003829 ENSCANP00000003829 PPP2R3B PPP2R3B LOC105512057 LOC105512057 PABPC5 PABPC5 ENSCANP00000003071 ENSCANP00000003071 DCLRE1B DCLRE1B ENSCANP00000002523 ENSCANP00000002523 BCL2L2-PABPN1 BCL2L2-PABPN1 CASC3 CASC3 PPP1CA PPP1CA ENSCANP00000001557 ENSCANP00000001557
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
YTHDC1YTH domain containing 1. (731 aa)
FIP1L1Factor interacting with PAPOLA and CPSF1. (594 aa)
PPP2R5ESerine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (456 aa)
NXT1Nuclear transport factor 2 like export factor 1. (140 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (709 aa)
SERAC1Serine active site containing 1. (654 aa)
ENSCANP00000015749TPR_REGION domain-containing protein. (340 aa)
C3orf67Chromosome 3 open reading frame 67. (690 aa)
HBS1LHBS1 like translational GTPase. (698 aa)
SMG6SMG6 nonsense mediated mRNA decay factor. (1389 aa)
WDR90WD repeat domain 90. (1716 aa)
ENSCANP00000016887RRM domain-containing protein. (128 aa)
UPF3AUPF3A regulator of nonsense mediated mRNA decay. (255 aa)
ZC3H3Zinc finger CCCH-type containing 3. (948 aa)
RBMX2RNA binding motif protein X-linked 2. (327 aa)
WDR82WD repeat domain 82. (313 aa)
MSL1MSL complex subunit 1. (414 aa)
CPSF1Cleavage and polyadenylation specific factor 1. (1403 aa)
ACIN1Apoptotic chromatin condensation inducer 1. (1339 aa)
LOC105507991Uncharacterized protein. (869 aa)
LOC105512709RRM domain-containing protein. (252 aa)
DCLRE1ADNA cross-link repair 1A. (1039 aa)
RNMTmRNA cap guanine-N7 methyltransferase. (503 aa)
ENSCANP00000020561TDP43_N domain-containing protein. (214 aa)
WDR33WD repeat domain 33. (1336 aa)
COPS5Uncharacterized protein. (78 aa)
BOLLBoule homolog, RNA binding protein. (321 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
PPP4R4Protein phosphatase 4 regulatory subunit 4. (854 aa)
CFAP20Cilia and flagella associated protein 20. (193 aa)
PPP2R3CProtein phosphatase 2 regulatory subunit B''gamma. (390 aa)
NXT2Nuclear transport factor 2 like export factor 2. (197 aa)
PABPC3Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (630 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (761 aa)
ENSCANP00000035884HipN domain-containing protein. (105 aa)
PPP2R1BProtein phosphatase 2 scaffold subunit Abeta. (667 aa)
MKRN1Uncharacterized protein. (404 aa)
DDX19B-2DEAD-box helicase 19A. (478 aa)
RNPS1RNA binding protein with serine rich domain 1. (305 aa)
DDX39BDExD-box helicase 39B. (428 aa)
FUSFUS RNA binding protein. (529 aa)
SYMPKSymplekin. (1299 aa)
ZC3H6Zinc finger CCCH-type containing 6. (1177 aa)
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
GLE1GLE1 RNA export mediator. (688 aa)
MSI1Musashi RNA binding protein 1. (328 aa)
DAZAP1DAZ associated protein 1. (408 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1243 aa)
SSU72SSU72 homolog, RNA polymerase II CTD phosphatase. (216 aa)
ENSCANP00000033208RRM domain-containing protein. (317 aa)
PPP1R42Protein phosphatase 1 regulatory subunit 42. (357 aa)
PPP2R2DSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (446 aa)
RBBP6RB binding protein 6, ubiquitin ligase. (1792 aa)
TMEM240Transmembrane protein 240. (154 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (138 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (276 aa)
PPP2R2CSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (447 aa)
MKRN3Uncharacterized protein. (182 aa)
PPP2R1AProtein phosphatase 2 scaffold subunit Aalpha. (594 aa)
JAZF1JAZF zinc finger 1. (243 aa)
PPP2CASerine/threonine-protein phosphatase. (275 aa)
PAPOLGPoly(A) polymerase gamma. (736 aa)
INTS9Integrator complex subunit 9. (630 aa)
ZC3H4Zinc finger CCCH-type containing 4. (1301 aa)
ENSCANP00000028939eRF1_1 domain-containing protein. (360 aa)
RBM3RRM domain-containing protein. (157 aa)
PPP4R1Protein phosphatase 4 regulatory subunit 1. (923 aa)
PABPC4LPoly(A) binding protein cytoplasmic 4 like. (370 aa)
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (612 aa)
NXF5Nuclear RNA export factor 5. (382 aa)
PPP2CBSerine/threonine-protein phosphatase. (275 aa)
CPSF6Cleavage and polyadenylation specific factor 6. (568 aa)
RNGTTPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (597 aa)
PIH1D3PIH1 domain containing 3. (209 aa)
CIRBPCold inducible RNA binding protein. (287 aa)
EIF2AEukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (586 aa)
DDX39AUncharacterized protein. (427 aa)
NCBP1Nuclear cap binding protein subunit 1. (790 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
MSI2Musashi RNA binding protein 2. (324 aa)
RNF141Ring finger protein 141. (249 aa)
LOC105517234Uncharacterized protein. (146 aa)
ENSCANP00000025588Uncharacterized protein. (242 aa)
TWF2Twinfilin actin binding protein 2. (349 aa)
ETF1Uncharacterized protein. (329 aa)
PPP1CCSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (341 aa)
GSPT1G1 to S phase transition 1. (415 aa)
PNNPinin, desmosome associated protein. (723 aa)
CSTF3Cleavage stimulation factor subunit 3. (717 aa)
INTS11Integrator complex subunit 11. (659 aa)
CPSF4LCleavage and polyadenylation specific factor 4 like. (179 aa)
PPP2R5CSerine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (579 aa)
MAGOHMago homolog, exon junction complex subunit. (146 aa)
PARP12Poly(ADP-ribose) polymerase family member 12. (608 aa)
PPP2R5ASerine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (480 aa)
ENSCANP00000022097TPR_REGION domain-containing protein. (321 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (639 aa)
PABPC4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (651 aa)
ENSCANP00000021476Uncharacterized protein. (427 aa)
ALYREFAly/REF export factor. (265 aa)
CZIBCXXC motif containing zinc binding protein. (160 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (436 aa)
SMG1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (2495 aa)
ENSCANP00000015533Uncharacterized protein. (258 aa)
TWF1Twinfilin actin binding protein 1. (375 aa)
PCF11PCF11 cleavage and polyadenylation factor subunit. (1555 aa)
LOC105512604RRM domain-containing protein. (290 aa)
ENSCANP00000007094RRM domain-containing protein. (384 aa)
PELOProtein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (385 aa)
CSTF2Cleavage stimulation factor subunit 2. (597 aa)
PPP2R3AProtein phosphatase 2 regulatory subunit B''alpha. (1150 aa)
WDR77WD repeat domain 77. (342 aa)
ENSCANP00000013556RRM domain-containing protein. (264 aa)
TARDBPTAR DNA binding protein. (414 aa)
PPP2R2BSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (509 aa)
ENSCANP00000013332Uncharacterized protein. (144 aa)
MKRN2Makorin ring finger protein 2. (416 aa)
PPP1CBSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (322 aa)
UPF1UPF1 RNA helicase and ATPase. (1079 aa)
ZGRF1Zinc finger GRF-type containing 1. (2056 aa)
MAGOHBMago homolog B, exon junction complex subunit. (148 aa)
LOC105500773NTF2 domain-containing protein. (389 aa)
NXF3Nuclear RNA export factor 3. (530 aa)
ENSCANP00000011816Uncharacterized protein. (560 aa)
SMG5SMG5 nonsense mediated mRNA decay factor. (1005 aa)
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (318 aa)
PPP2R2ASerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (457 aa)
DDX19BDEAD-box helicase 19B. (316 aa)
MORN1MORN repeat containing 1. (493 aa)
DDX25DEAD-box helicase 25. (483 aa)
SAP18Sin3A associated protein 18. (172 aa)
SRRM1Serine and arginine repetitive matrix 1. (913 aa)
LOC105509126STI1 domain-containing protein. (310 aa)
ENSCANP00000037307Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (493 aa)
ENSCANP00000037990Uncharacterized protein. (52 aa)
FNBP4Formin binding protein 4. (950 aa)
NXF1Nuclear RNA export factor 1. (619 aa)
TUT1RRM domain-containing protein. (916 aa)
ENSCANP00000039326STI1 domain-containing protein. (213 aa)
ENSCANP00000039337Uncharacterized protein. (110 aa)
PPP2R5BSerine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (515 aa)
EIF4A3Eukaryotic translation initiation factor 4A3. (362 aa)
TMEM223Transmembrane protein 223. (202 aa)
TMEM258Transmembrane protein 258. (79 aa)
LOC105513967eRF1_1 domain-containing protein. (428 aa)
DUSP11Dual specificity phosphatase 11. (378 aa)
ENSCANP00000004139RRM domain-containing protein. (157 aa)
LOC105510963Serine/threonine-protein phosphatase. (291 aa)
ENSCANP00000008785Uncharacterized protein. (314 aa)
POLDIP3DNA polymerase delta interacting protein 3. (421 aa)
ENSCANP00000008386PWI domain-containing protein. (776 aa)
PPP2R5DSerine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (605 aa)
ST13ST13 Hsp70 interacting protein. (334 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (640 aa)
PYM1Mago-bind domain-containing protein. (204 aa)
NEDD1NEDD1 gamma-tubulin ring complex targeting factor. (660 aa)
LOC105520740Uncharacterized protein. (463 aa)
ZC3H8Zinc finger CCCH-type containing 8. (249 aa)
SMG7SMG7 nonsense mediated mRNA decay factor. (1145 aa)
CPSF4Cleavage and polyadenylation specific factor 4. (269 aa)
ENSCANP00000005866Mago-bind domain-containing protein. (219 aa)
ENSCANP00000003829PABC domain-containing protein. (284 aa)
PPP2R3BEF-hand domain-containing protein. (176 aa)
LOC105512057C3H1-type domain-containing protein. (215 aa)
PABPC5Poly(A) binding protein cytoplasmic 5. (382 aa)
ENSCANP00000003071SER_THR_PHOSPHATASE domain-containing protein. (146 aa)
DCLRE1BDNA cross-link repair 1B. (532 aa)
ENSCANP00000002523Uncharacterized protein. (422 aa)
BCL2L2-PABPN1BCL2L2-PABPN1 readthrough. (333 aa)
CASC3CASC3 exon junction complex subunit. (704 aa)
PPP1CASerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (329 aa)
ENSCANP00000001557RRM domain-containing protein. (316 aa)
Your Current Organism:
Colobus angolensis
NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus
Server load: low (18%) [HD]