Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Pcar_0797 | Pcar_2864 | Pcar_0797 | Pcar_2864 | DNA polymerase, putative. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.463 |
| Pcar_0797 | polA | Pcar_0797 | Pcar_0592 | DNA polymerase, putative. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.953 |
| Pcar_2273 | Pcar_2864 | Pcar_2273 | Pcar_2864 | Ribonuclease HI. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.950 |
| Pcar_2273 | polA | Pcar_2273 | Pcar_0592 | Ribonuclease HI. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.528 |
| Pcar_2273 | rnhA | Pcar_2273 | Pcar_0204 | Ribonuclease HI. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.900 |
| Pcar_2273 | rnhB | Pcar_2273 | Pcar_2218 | Ribonuclease HI. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.731 |
| Pcar_2273 | ssb | Pcar_2273 | Pcar_0643 | Ribonuclease HI. | Single-strand-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.751 |
| Pcar_2613 | Pcar_2864 | Pcar_2613 | Pcar_2864 | 3'-to-5' exonuclease, putative. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.504 |
| Pcar_2613 | dnaE-1 | Pcar_2613 | Pcar_1222 | 3'-to-5' exonuclease, putative. | DNA polymerase III, alpha subunit. | 0.920 |
| Pcar_2613 | dnaN | Pcar_2613 | Pcar_0002 | 3'-to-5' exonuclease, putative. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.939 |
| Pcar_2613 | dnaX | Pcar_2613 | Pcar_0374 | 3'-to-5' exonuclease, putative. | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.919 |
| Pcar_2613 | holA | Pcar_2613 | Pcar_1415 | 3'-to-5' exonuclease, putative. | DNA polymerase III, delta subunit. | 0.928 |
| Pcar_2613 | holB | Pcar_2613 | Pcar_1692 | 3'-to-5' exonuclease, putative. | DNA polymerase III, delta-prime subunit. | 0.919 |
| Pcar_2613 | holC | Pcar_2613 | Pcar_1548 | 3'-to-5' exonuclease, putative. | DNA polymerase III, chi subunit. | 0.900 |
| Pcar_2613 | ligA | Pcar_2613 | Pcar_2213 | 3'-to-5' exonuclease, putative. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.456 |
| Pcar_2613 | polA | Pcar_2613 | Pcar_0592 | 3'-to-5' exonuclease, putative. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.504 |
| Pcar_2864 | Pcar_0797 | Pcar_2864 | Pcar_0797 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase, putative. | 0.463 |
| Pcar_2864 | Pcar_2273 | Pcar_2864 | Pcar_2273 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Ribonuclease HI. | 0.950 |
| Pcar_2864 | Pcar_2613 | Pcar_2864 | Pcar_2613 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 3'-to-5' exonuclease, putative. | 0.504 |
| Pcar_2864 | dnaB | Pcar_2864 | Pcar_1995 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.660 |
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