STRINGSTRING
Rfer_1804 Rfer_1804 Rfer_1805 Rfer_1805 Rfer_1839 Rfer_1839 Rfer_1840 Rfer_1840 Rfer_1841 Rfer_1841 Rfer_1842 Rfer_1842 Rfer_1843 Rfer_1843 Rfer_1844 Rfer_1844 Rfer_1845 Rfer_1845 Rfer_1846 Rfer_1846 Rfer_1847 Rfer_1847 mdcB mdcB Rfer_1850 Rfer_1850 Rfer_1851 Rfer_1851 Rfer_1852 Rfer_1852 Rfer_2404 Rfer_2404 citG citG Rfer_2406 Rfer_2406 Rfer_2407 Rfer_2407 Rfer_2408 Rfer_2408 citD citD Rfer_2410 Rfer_2410 Rfer_2412 Rfer_2412 Rfer_3484 Rfer_3484 Rfer_3486 Rfer_3486 Rfer_3488 Rfer_3488 Rfer_3489 Rfer_3489 Rfer_3490 Rfer_3490 Rfer_4171 Rfer_4171 Rfer_4179 Rfer_4179
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rfer_1804Putative citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family. (354 aa)
Rfer_1805Hypothetical protein. (233 aa)
Rfer_1839Transcriptional regulator, GntR family. (220 aa)
Rfer_1840TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm. (338 aa)
Rfer_1841Tripartite ATP-independent periplasmic transporter, DctQ component. (165 aa)
Rfer_1842TRAP dicarboxylate transporter- DctM subunit. (449 aa)
Rfer_1843Alpha subunit of malonate decarboxylase. (558 aa)
Rfer_1844Malonate decarboxylase delta subunit. (110 aa)
Rfer_1845acetyl-CoA carboxylase beta subunit. (295 aa)
Rfer_1846Malonate decarboxylase gamma subunit. (232 aa)
Rfer_1847Malonate decarboxylase. (231 aa)
mdcBTriphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family. (318 aa)
Rfer_1850Hypothetical protein. (1085 aa)
Rfer_1851Conserved hypothetical protein. (402 aa)
Rfer_1852Patatin. (336 aa)
Rfer_2404Protein of unknown function DUF1234. (201 aa)
citGTriphosphoribosyl-dephospho-CoA synthase. (302 aa)
Rfer_2406Holo-citrate lyase synthase. (183 aa)
Rfer_2407Citrate lyase, alpha subunit. (512 aa)
Rfer_2408Citrate lyase, beta subunit; Belongs to the HpcH/HpaI aldolase family. (290 aa)
citDCitrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase. (98 aa)
Rfer_2410Citrate lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase. (364 aa)
Rfer_2412Anion transporter. (481 aa)
Rfer_3484Conserved hypothetical protein. (281 aa)
Rfer_3486HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (279 aa)
Rfer_3488Precorrin 3B synthase CobZ. (486 aa)
Rfer_3489Citrate utilization protein B. (388 aa)
Rfer_3490Conserved hypothetical 37.1 kDa protein in ModC-BioA intergenic region. (62 aa)
Rfer_4171Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (305 aa)
Rfer_4179Citrate lyase; Belongs to the HpcH/HpaI aldolase family. (302 aa)
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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