(13 nodes) Mostly uncharacterized, incl. Double-strand break repair, and Ketone body catabolic process network (Rhodoferax ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	Rfer_1839	Transcriptional regulator, GntR family. (220 aa)
	Rfer_1840	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm. (338 aa)
	Rfer_1841	Tripartite ATP-independent periplasmic transporter, DctQ component. (165 aa)
	Rfer_1842	TRAP dicarboxylate transporter- DctM subunit. (449 aa)
	Rfer_1843	Alpha subunit of malonate decarboxylase. (558 aa)
	Rfer_1844	Malonate decarboxylase delta subunit. (110 aa)
	Rfer_1845	acetyl-CoA carboxylase beta subunit. (295 aa)
	Rfer_1846	Malonate decarboxylase gamma subunit. (232 aa)
	Rfer_1847	Malonate decarboxylase. (231 aa)
	mdcB	Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family. (318 aa)
	Rfer_1850	Hypothetical protein. (1085 aa)
	Rfer_1851	Conserved hypothetical protein. (402 aa)
	Rfer_1852	Patatin. (336 aa)

Your Current Organism:

Rhodoferax ferrireducens

NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rfer_1839	Rfer_1840	Rfer_1839	Rfer_1840	Transcriptional regulator, GntR family.	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	0.732
Rfer_1839	Rfer_1841	Rfer_1839	Rfer_1841	Transcriptional regulator, GntR family.	Tripartite ATP-independent periplasmic transporter, DctQ component.	0.690
Rfer_1839	Rfer_1842	Rfer_1839	Rfer_1842	Transcriptional regulator, GntR family.	TRAP dicarboxylate transporter- DctM subunit.	0.551
Rfer_1839	Rfer_1843	Rfer_1839	Rfer_1843	Transcriptional regulator, GntR family.	Alpha subunit of malonate decarboxylase.	0.414
Rfer_1839	Rfer_1845	Rfer_1839	Rfer_1845	Transcriptional regulator, GntR family.	acetyl-CoA carboxylase beta subunit.	0.488
Rfer_1839	Rfer_1846	Rfer_1839	Rfer_1846	Transcriptional regulator, GntR family.	Malonate decarboxylase gamma subunit.	0.476
Rfer_1839	Rfer_1847	Rfer_1839	Rfer_1847	Transcriptional regulator, GntR family.	Malonate decarboxylase.	0.449
Rfer_1839	mdcB	Rfer_1839	Rfer_1848	Transcriptional regulator, GntR family.	Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.	0.433
Rfer_1840	Rfer_1839	Rfer_1840	Rfer_1839	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	Transcriptional regulator, GntR family.	0.732
Rfer_1840	Rfer_1841	Rfer_1840	Rfer_1841	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	Tripartite ATP-independent periplasmic transporter, DctQ component.	0.936
Rfer_1840	Rfer_1842	Rfer_1840	Rfer_1842	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	TRAP dicarboxylate transporter- DctM subunit.	0.916
Rfer_1840	Rfer_1843	Rfer_1840	Rfer_1843	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	Alpha subunit of malonate decarboxylase.	0.595
Rfer_1840	Rfer_1844	Rfer_1840	Rfer_1844	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	Malonate decarboxylase delta subunit.	0.562
Rfer_1840	Rfer_1845	Rfer_1840	Rfer_1845	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	acetyl-CoA carboxylase beta subunit.	0.619
Rfer_1840	Rfer_1846	Rfer_1840	Rfer_1846	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	Malonate decarboxylase gamma subunit.	0.633
Rfer_1840	Rfer_1847	Rfer_1840	Rfer_1847	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	Malonate decarboxylase.	0.613
Rfer_1840	mdcB	Rfer_1840	Rfer_1848	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.	0.495
Rfer_1841	Rfer_1839	Rfer_1841	Rfer_1839	Tripartite ATP-independent periplasmic transporter, DctQ component.	Transcriptional regulator, GntR family.	0.690
Rfer_1841	Rfer_1840	Rfer_1841	Rfer_1840	Tripartite ATP-independent periplasmic transporter, DctQ component.	TRAP dicarboxylate transporter- DctP subunit; Solute-binding protein that binds malonate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	0.936
Rfer_1841	Rfer_1842	Rfer_1841	Rfer_1842	Tripartite ATP-independent periplasmic transporter, DctQ component.	TRAP dicarboxylate transporter- DctM subunit.	0.977

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