STRINGSTRING
mnmC mnmC Rfer_0231 Rfer_0231 Rfer_0240 Rfer_0240 Rfer_0347 Rfer_0347 Rfer_0884 Rfer_0884 Rfer_1640 Rfer_1640 Rfer_1987 Rfer_1987 Rfer_2269 Rfer_2269 Rfer_2277 Rfer_2277 Rfer_2333 Rfer_2333 Rfer_2464 Rfer_2464 Rfer_3018 Rfer_3018 Rfer_3229 Rfer_3229 Rfer_3670 Rfer_3670 Rfer_4053 Rfer_4053 Rfer_4163 Rfer_4163
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
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Your Input:
mnmCFAD dependent oxidoreductase; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 (By similarity); In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family. (609 aa)
Rfer_0231FAD dependent oxidoreductase. (427 aa)
Rfer_0240FAD dependent oxidoreductase. (425 aa)
Rfer_0347FAD dependent oxidoreductase. (433 aa)
Rfer_0884FAD dependent oxidoreductase. (377 aa)
Rfer_1640FAD dependent oxidoreductase. (366 aa)
Rfer_1987D-amino-acid dehydrogenase. (408 aa)
Rfer_2269Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. (587 aa)
Rfer_2277FAD dependent oxidoreductase. (486 aa)
Rfer_2333FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (546 aa)
Rfer_2464FAD dependent oxidoreductase. (358 aa)
Rfer_3018Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. (572 aa)
Rfer_3229FAD dependent oxidoreductase. (391 aa)
Rfer_3670FAD dependent oxidoreductase. (566 aa)
Rfer_4053FAD dependent oxidoreductase. (389 aa)
Rfer_4163Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. (572 aa)
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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