STRINGSTRING
HopD HopD crtI-2 crtI-2 CrtI CrtI CrtY CrtY CrtU CrtU
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HopDSqualene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
crtI-2Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
CrtIPhytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
CrtYLycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
CrtUIsorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
Your Current Organism:
Streptomyces avermitilis
NCBI taxonomy Id: 33903
Other names: ATCC 31267, DSM 46492, JCM 5070, NBRC 14893, NCIMB 12804, NRRL 8165, S. avermitilis, Streptomyces avermectinius, Streptomyces avermectinius Takahashi et al. 2002, strain MA-4680
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