(8 nodes) Response to metal ion network (Lysinibacillus macroides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mntH	Manganese transport protein MntH; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. (421 aa)
	KOY84144.1	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	KOY84073.1	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	KOY83357.1	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	KOY81761.1	Peptidase C60; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	KOY80479.1	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	KOY80111.1	Nucleotide excision repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
	KOY83694.1	Cobalamin biosynthesis protein CbiY; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)

Your Current Organism:

Lysinibacillus macroides

NCBI taxonomy Id: 33935
Other names: ATCC 12905, Bacillus macroides, DSM 54, L. macroides, LMG 18474, LMG:18474, Lineola longa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOY80479.1	KOY83357.1	ADM90_20735	ADM90_08805	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KOY83357.1	KOY80479.1	ADM90_08805	ADM90_20735	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KOY83357.1	mntH	ADM90_08805	ADM90_01990	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese transport protein MntH; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.	0.521
mntH	KOY83357.1	ADM90_01990	ADM90_08805	Manganese transport protein MntH; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521