(5 nodes) Mixed, incl. Amino acid kinase family, and Prenyltransferase activity network (Lactobacillus johnsonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pyrH	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP. (241 aa)
	frr	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. (185 aa)
	AOG25445.1	Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (239 aa)
	cdsA	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	AOG25447.1	RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)

Your Current Organism:

Lactobacillus johnsonii

NCBI taxonomy Id: 33959
Other names: ATCC 33200, CCUG 30725, CIP 103620, DSM 10533, JCM 2012, L. johnsonii, VPI 7960

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOG25445.1	AOG25447.1	BBP16_00275	BBP16_00285	Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AOG25445.1	cdsA	BBP16_00275	BBP16_00280	Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AOG25445.1	frr	BBP16_00275	BBP16_00270	Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	0.946
AOG25445.1	pyrH	BBP16_00275	BBP16_00265	Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.919
AOG25447.1	AOG25445.1	BBP16_00285	BBP16_00275	RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.911
AOG25447.1	cdsA	BBP16_00285	BBP16_00280	RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AOG25447.1	frr	BBP16_00285	BBP16_00270	RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	0.831
AOG25447.1	pyrH	BBP16_00285	BBP16_00265	RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.815
cdsA	AOG25445.1	BBP16_00280	BBP16_00275	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.990
cdsA	AOG25447.1	BBP16_00280	BBP16_00285	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
cdsA	frr	BBP16_00280	BBP16_00270	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	0.778
cdsA	pyrH	BBP16_00280	BBP16_00265	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.810
frr	AOG25445.1	BBP16_00270	BBP16_00275	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.946
frr	AOG25447.1	BBP16_00270	BBP16_00285	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
frr	cdsA	BBP16_00270	BBP16_00280	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
frr	pyrH	BBP16_00270	BBP16_00265	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.996
pyrH	AOG25445.1	BBP16_00265	BBP16_00275	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.919
pyrH	AOG25447.1	BBP16_00265	BBP16_00285	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
pyrH	cdsA	BBP16_00265	BBP16_00280	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.810
pyrH	frr	BBP16_00265	BBP16_00270	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	0.996