(7 nodes) NMS complex, and MIS12/MIND type complex network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00089	Uncharacterized protein. (726 aa)
	HCAG_00871	DHR10 domain-containing protein. (432 aa)
	HCAG_01114	Uncharacterized protein. (515 aa)
	HCAG_02004	Uncharacterized protein. (188 aa)
	HCAG_05466	Uncharacterized protein. (287 aa)
	HCAG_05965	Uncharacterized protein. (200 aa)
	HCAG_07774	Spc7 domain-containing protein. (1587 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00089	HCAG_00871	A6QRT3	A6QU15	Uncharacterized protein.	DHR10 domain-containing protein.	0.999
HCAG_00089	HCAG_01114	A6QRT3	A6QUQ8	Uncharacterized protein.	Uncharacterized protein.	0.798
HCAG_00089	HCAG_02004	A6QRT3	A6QX97	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_00089	HCAG_05965	A6QRT3	A6RAH7	Uncharacterized protein.	Uncharacterized protein.	0.974
HCAG_00089	HCAG_07774	A6QRT3	A6RDR6	Uncharacterized protein.	Spc7 domain-containing protein.	0.580
HCAG_00871	HCAG_00089	A6QU15	A6QRT3	DHR10 domain-containing protein.	Uncharacterized protein.	0.999
HCAG_00871	HCAG_01114	A6QU15	A6QUQ8	DHR10 domain-containing protein.	Uncharacterized protein.	0.857
HCAG_00871	HCAG_02004	A6QU15	A6QX97	DHR10 domain-containing protein.	Uncharacterized protein.	0.999
HCAG_00871	HCAG_05965	A6QU15	A6RAH7	DHR10 domain-containing protein.	Uncharacterized protein.	0.946
HCAG_00871	HCAG_07774	A6QU15	A6RDR6	DHR10 domain-containing protein.	Spc7 domain-containing protein.	0.646
HCAG_01114	HCAG_00089	A6QUQ8	A6QRT3	Uncharacterized protein.	Uncharacterized protein.	0.798
HCAG_01114	HCAG_00871	A6QUQ8	A6QU15	Uncharacterized protein.	DHR10 domain-containing protein.	0.857
HCAG_01114	HCAG_02004	A6QUQ8	A6QX97	Uncharacterized protein.	Uncharacterized protein.	0.951
HCAG_01114	HCAG_05466	A6QUQ8	A6R758	Uncharacterized protein.	Uncharacterized protein.	0.963
HCAG_01114	HCAG_05965	A6QUQ8	A6RAH7	Uncharacterized protein.	Uncharacterized protein.	0.945
HCAG_01114	HCAG_07774	A6QUQ8	A6RDR6	Uncharacterized protein.	Spc7 domain-containing protein.	0.922
HCAG_02004	HCAG_00089	A6QX97	A6QRT3	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_02004	HCAG_00871	A6QX97	A6QU15	Uncharacterized protein.	DHR10 domain-containing protein.	0.999
HCAG_02004	HCAG_01114	A6QX97	A6QUQ8	Uncharacterized protein.	Uncharacterized protein.	0.951
HCAG_02004	HCAG_05965	A6QX97	A6RAH7	Uncharacterized protein.	Uncharacterized protein.	0.993