(42 nodes) mRNA 3-end processing, and RNA surveillance network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00020	Uncharacterized protein. (367 aa)
	HCAG_00337	Uncharacterized protein. (285 aa)
	HCAG_00700	zf-C3H1 domain-containing protein. (1222 aa)
	HCAG_00807	Serine/threonine-protein phosphatase. (213 aa)
	HCAG_00822	CPSF_A domain-containing protein. (1283 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (541 aa)
	HCAG_01327	CID domain-containing protein. (423 aa)
	HCAG_01588	YTH domain-containing protein. (774 aa)
	HCAG_02036	Uncharacterized protein. (524 aa)
	HCAG_02152	Uncharacterized protein. (925 aa)
	HCAG_02302	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (594 aa)
	HCAG_02314	Uncharacterized protein. (1178 aa)
	HCAG_02584	WD repeat protein. (362 aa)
	HCAG_02724	DUF3453 domain-containing protein. (849 aa)
	HCAG_02832	Uncharacterized protein. (419 aa)
	HCAG_03214	Uncharacterized protein. (2150 aa)
	HCAG_03479	Uncharacterized protein. (558 aa)
	HCAG_03684	RRM domain-containing protein. (301 aa)
	HCAG_04017	Uncharacterized protein. (1015 aa)
	HCAG_04052	Uncharacterized protein. (430 aa)
	HCAG_04482	Uncharacterized protein. (292 aa)
	HCAG_04743	Uncharacterized protein. (251 aa)
	HCAG_04841	Serine/threonine-protein phosphatase. (253 aa)
	HCAG_04905	Uncharacterized protein. (612 aa)
	HCAG_04949	Fip1 domain-containing protein. (372 aa)
	HCAG_05441	Cleavage and polyadenylation specificity factor subunit 2. (977 aa)
	HCAG_05449	RRM domain-containing protein. (723 aa)
	HCAG_06696	CCHC-type domain-containing protein. (475 aa)
	HCAG_06697	Uncharacterized protein. (232 aa)
	HCAG_06875	RAI1 domain-containing protein. (396 aa)
	HCAG_06979	RRM domain-containing protein. (588 aa)
	HCAG_06980	CID domain-containing protein. (131 aa)
	HCAG_05987	RRM domain-containing protein. (797 aa)
	HCAG_07044	Uncharacterized protein. (657 aa)
	HCAG_07349	WD_REPEATS_REGION domain-containing protein. (619 aa)
	HCAG_07996	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (630 aa)
	HCAG_08104	Uncharacterized protein. (673 aa)
	HCAG_08280	Methyltransf_11 domain-containing protein. (943 aa)
	HCAG_08282	DRMBL domain-containing protein. (835 aa)
	HCAG_08775	Uncharacterized protein. (917 aa)
	HCAG_09100	Uncharacterized protein. (398 aa)
	HCAG_09308	Retrotrans_gag domain-containing protein. (205 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLP1	HCAG_00020	A6QU08	A6QRL4	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.605
CLP1	HCAG_00337	A6QU08	A6QSI1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.810
CLP1	HCAG_00822	A6QU08	A6QTW6	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	CPSF_A domain-containing protein.	0.841
CLP1	HCAG_01588	A6QU08	A6QW31	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	YTH domain-containing protein.	0.636
CLP1	HCAG_02036	A6QU08	A6QXC9	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.441
CLP1	HCAG_02152	A6QU08	A6QXP5	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.916
CLP1	HCAG_02302	A6QU08	A6QY45	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.813
CLP1	HCAG_02314	A6QU08	A6QY57	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.719
CLP1	HCAG_02724	A6QU08	A6QZB7	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	DUF3453 domain-containing protein.	0.729
CLP1	HCAG_03684	A6QU08	A6R226	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	RRM domain-containing protein.	0.990
CLP1	HCAG_04017	A6QU08	A6R309	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.854
CLP1	HCAG_04052	A6QU08	A6R344	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.739
CLP1	HCAG_04482	A6QU08	A6R4C4	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.493
CLP1	HCAG_04743	A6QU08	A6R535	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.956
CLP1	HCAG_04905	A6QU08	A6R5J7	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.858
CLP1	HCAG_04949	A6QU08	A6R5P1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Fip1 domain-containing protein.	0.881
CLP1	HCAG_05441	A6QU08	A6R733	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Cleavage and polyadenylation specificity factor subunit 2.	0.909
CLP1	HCAG_07349	A6QU08	A6RCJ1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	WD_REPEATS_REGION domain-containing protein.	0.689
CLP1	HCAG_08282	A6QU08	A6RF66	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	DRMBL domain-containing protein.	0.573
CLP1	HCAG_08775	A6QU08	A6RGK8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.928