(23 nodes) Ribosomal protein network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00164	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family. (184 aa)
	HCAG_01947	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	HCAG_01981	Ribosomal_L6 domain-containing protein. (98 aa)
	HCAG_02186	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (98 aa)
	HCAG_03007	Ribosomal protein L39. (51 aa)
	HCAG_03055	Ribosomal protein L23a. (146 aa)
	HCAG_03593	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (174 aa)
	HCAG_03923	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (346 aa)
	HCAG_04185	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (103 aa)
	HCAG_04519	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	HCAG_04561	Uncharacterized protein. (120 aa)
	HCAG_04662	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	HCAG_05221	Ribosomal protein L7a. (262 aa)
	HCAG_06425	Ribosomal protein L32. (131 aa)
	HCAG_06534	60S ribosomal protein L43. (92 aa)
	HCAG_06566	Ubiquitin/79aa fusion protein. (154 aa)
	HCAG_07249	40S ribosomal protein S9. (178 aa)
	HCAG_07708	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (218 aa)
	HCAG_07961	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (258 aa)
	HCAG_08444	60S ribosomal protein L5. (299 aa)
	HCAG_08515	60S ribosomal protein L2. (254 aa)
	HCAG_08667	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (155 aa)
	HCAG_08706	60S ribosomal protein L7. (248 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00164	HCAG_01947	A6QS08	A6QX40	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
HCAG_00164	HCAG_01981	A6QS08	A6QX74	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Ribosomal_L6 domain-containing protein.	0.999
HCAG_00164	HCAG_02186	A6QS08	A6QXS9	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
HCAG_00164	HCAG_03007	A6QS08	A6R050	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein L39.	0.999
HCAG_00164	HCAG_03055	A6QS08	A6R098	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein L23a.	0.999
HCAG_00164	HCAG_03593	A6QS08	A6R1T5	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
HCAG_00164	HCAG_03923	A6QS08	A6R2R5	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
HCAG_00164	HCAG_04185	A6QS08	A6R3H7	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
HCAG_00164	HCAG_04519	A6QS08	A6R4G1	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
HCAG_00164	HCAG_04561	A6QS08	A6R4K3	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
HCAG_00164	HCAG_04662	A6QS08	A6R4V4	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
HCAG_00164	HCAG_05221	A6QS08	A6R6G3	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein L7a.	0.999
HCAG_00164	HCAG_06425	A6QS08	A6R7Y4	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein L32.	0.999
HCAG_00164	HCAG_06534	A6QS08	A6R893	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L43.	0.999
HCAG_00164	HCAG_06566	A6QS08	A6R8C5	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Ubiquitin/79aa fusion protein.	0.999
HCAG_00164	HCAG_07249	A6QS08	A6RC91	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	40S ribosomal protein S9.	0.999
HCAG_00164	HCAG_07708	A6QS08	A6RDK0	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
HCAG_00164	HCAG_07961	A6QS08	A6RE96	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
HCAG_00164	HCAG_08444	A6QS08	A6RFM8	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L5.	0.999
HCAG_00164	HCAG_08515	A6QS08	A6RFU9	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L2.	0.999