(6 nodes) TIM23 mitochondrial import inner membrane translocase complex network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_04005	Mitochondrial import inner membrane translocase subunit tim23. (213 aa)
	HCAG_04515	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. (551 aa)
	HCAG_05856	Uncharacterized protein. (143 aa)
	HCAG_06176	Mitochondrial import inner membrane translocase subunit tim-14. (104 aa)
	HCAG_08101	Mitochondrial import inner membrane translocase subunit tim-16. (139 aa)
	HCAG_08185	Uncharacterized protein. (240 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_04005	HCAG_04515	A6R2Z7	A6R4F7	Mitochondrial import inner membrane translocase subunit tim23.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.994
HCAG_04005	HCAG_05856	A6R2Z7	A6RA68	Mitochondrial import inner membrane translocase subunit tim23.	Uncharacterized protein.	0.993
HCAG_04005	HCAG_06176	A6R2Z7	A6RB38	Mitochondrial import inner membrane translocase subunit tim23.	Mitochondrial import inner membrane translocase subunit tim-14.	0.963
HCAG_04005	HCAG_08101	A6R2Z7	A6REN6	Mitochondrial import inner membrane translocase subunit tim23.	Mitochondrial import inner membrane translocase subunit tim-16.	0.971
HCAG_04005	HCAG_08185	A6R2Z7	A6REX0	Mitochondrial import inner membrane translocase subunit tim23.	Uncharacterized protein.	0.985
HCAG_04515	HCAG_04005	A6R4F7	A6R2Z7	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Mitochondrial import inner membrane translocase subunit tim23.	0.994
HCAG_04515	HCAG_05856	A6R4F7	A6RA68	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Uncharacterized protein.	0.968
HCAG_04515	HCAG_06176	A6R4F7	A6RB38	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Mitochondrial import inner membrane translocase subunit tim-14.	0.848
HCAG_04515	HCAG_08101	A6R4F7	A6REN6	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Mitochondrial import inner membrane translocase subunit tim-16.	0.903
HCAG_04515	HCAG_08185	A6R4F7	A6REX0	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Uncharacterized protein.	0.968
HCAG_05856	HCAG_04005	A6RA68	A6R2Z7	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit tim23.	0.993
HCAG_05856	HCAG_04515	A6RA68	A6R4F7	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.968
HCAG_05856	HCAG_06176	A6RA68	A6RB38	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit tim-14.	0.887
HCAG_05856	HCAG_08101	A6RA68	A6REN6	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit tim-16.	0.940
HCAG_05856	HCAG_08185	A6RA68	A6REX0	Uncharacterized protein.	Uncharacterized protein.	0.930
HCAG_06176	HCAG_04005	A6RB38	A6R2Z7	Mitochondrial import inner membrane translocase subunit tim-14.	Mitochondrial import inner membrane translocase subunit tim23.	0.963
HCAG_06176	HCAG_04515	A6RB38	A6R4F7	Mitochondrial import inner membrane translocase subunit tim-14.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.848
HCAG_06176	HCAG_05856	A6RB38	A6RA68	Mitochondrial import inner membrane translocase subunit tim-14.	Uncharacterized protein.	0.887
HCAG_06176	HCAG_08101	A6RB38	A6REN6	Mitochondrial import inner membrane translocase subunit tim-14.	Mitochondrial import inner membrane translocase subunit tim-16.	0.993
HCAG_06176	HCAG_08185	A6RB38	A6REX0	Mitochondrial import inner membrane translocase subunit tim-14.	Uncharacterized protein.	0.853