(23 nodes) Histone deacetylation, and Set3 complex network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00535	Uncharacterized protein. (1628 aa)
	HCAG_00682	Uncharacterized protein. (423 aa)
	HCAG_00803	Thioredoxin-like_fold domain-containing protein. (211 aa)
	HCAG_01534	PHD-type domain-containing protein. (679 aa)
	HCAG_01679	MRG domain-containing protein. (331 aa)
	HCAG_01983	RXT2_N domain-containing protein. (555 aa)
	HCAG_02718	Uncharacterized protein. (118 aa)
	HCAG_02719	Uncharacterized protein. (415 aa)
	HCAG_02817	FAS1 domain-containing protein. (173 aa)
	HCAG_02842	HDAC_interact domain-containing protein. (1589 aa)
	HCAG_03791	Uncharacterized protein. (1202 aa)
	HCAG_04474	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (481 aa)
	HCAG_04517	Hist_deacetyl domain-containing protein. (213 aa)
	HCAG_04518	Uncharacterized protein. (291 aa)
	HCAG_04892	SANT domain-containing protein. (1564 aa)
	HCAG_04908	Arb2 domain-containing protein. (198 aa)
	HCAG_04909	Hist_deacetyl domain-containing protein. (161 aa)
	HCAG_05226	Uncharacterized protein. (626 aa)
	HCAG_06521	PHD-type domain-containing protein. (904 aa)
	HCAG_06802	Uncharacterized protein. (518 aa)
	HCAG_07020	Uncharacterized protein. (1080 aa)
	HCAG_07841	SET domain-containing protein. (1110 aa)
	HCAG_08002	Hist_deacetyl domain-containing protein. (693 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00535	HCAG_01679	A6QT29	A6QWC2	Uncharacterized protein.	MRG domain-containing protein.	0.772
HCAG_00535	HCAG_02817	A6QT29	A6QZL0	Uncharacterized protein.	FAS1 domain-containing protein.	0.649
HCAG_00535	HCAG_02842	A6QT29	A6QZN5	Uncharacterized protein.	HDAC_interact domain-containing protein.	0.649
HCAG_00535	HCAG_04474	A6QT29	A6R4B6	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.517
HCAG_00535	HCAG_04517	A6QT29	A6R4F9	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.517
HCAG_00535	HCAG_04518	A6QT29	A6R4G0	Uncharacterized protein.	Uncharacterized protein.	0.517
HCAG_00535	HCAG_06521	A6QT29	A6R880	Uncharacterized protein.	PHD-type domain-containing protein.	0.759
HCAG_00535	HCAG_07020	A6QT29	A6RBL2	Uncharacterized protein.	Uncharacterized protein.	0.504
HCAG_00682	HCAG_01534	A6QTH6	A6QVX7	Uncharacterized protein.	PHD-type domain-containing protein.	0.589
HCAG_00682	HCAG_01679	A6QTH6	A6QWC2	Uncharacterized protein.	MRG domain-containing protein.	0.531
HCAG_00682	HCAG_01983	A6QTH6	A6QX76	Uncharacterized protein.	RXT2_N domain-containing protein.	0.840
HCAG_00682	HCAG_02718	A6QTH6	A6QZB1	Uncharacterized protein.	Uncharacterized protein.	0.533
HCAG_00682	HCAG_02719	A6QTH6	A6QZB2	Uncharacterized protein.	Uncharacterized protein.	0.533
HCAG_00682	HCAG_02817	A6QTH6	A6QZL0	Uncharacterized protein.	FAS1 domain-containing protein.	0.637
HCAG_00682	HCAG_02842	A6QTH6	A6QZN5	Uncharacterized protein.	HDAC_interact domain-containing protein.	0.637
HCAG_00682	HCAG_03791	A6QTH6	A6R2D3	Uncharacterized protein.	Uncharacterized protein.	0.803
HCAG_00682	HCAG_04474	A6QTH6	A6R4B6	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.447
HCAG_00682	HCAG_04517	A6QTH6	A6R4F9	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.659
HCAG_00682	HCAG_04518	A6QTH6	A6R4G0	Uncharacterized protein.	Uncharacterized protein.	0.659
HCAG_00682	HCAG_05226	A6QTH6	A6R6G8	Uncharacterized protein.	Uncharacterized protein.	0.639