(5 nodes) CCAAT-binding factor complex, and DNA replication preinitiation complex assembly network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00574	Uncharacterized protein. (304 aa)
	HCAG_00944	CBFD_NFYB_HMF domain-containing protein. (211 aa)
	HCAG_04603	Transcriptional activator hap3. (149 aa)
	HCAG_06910	CCAAT-binding factor complex subunit HapE. (286 aa)
	HCAG_08326	Uncharacterized protein. (327 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00574	HCAG_00944	A6QT68	A6QU88	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.566
HCAG_00574	HCAG_04603	A6QT68	A6R4P5	Uncharacterized protein.	Transcriptional activator hap3.	0.758
HCAG_00574	HCAG_06910	A6QT68	A6R9B9	Uncharacterized protein.	CCAAT-binding factor complex subunit HapE.	0.852
HCAG_00574	HCAG_08326	A6QT68	A6RFB0	Uncharacterized protein.	Uncharacterized protein.	0.780
HCAG_00944	HCAG_00574	A6QU88	A6QT68	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.566
HCAG_00944	HCAG_04603	A6QU88	A6R4P5	CBFD_NFYB_HMF domain-containing protein.	Transcriptional activator hap3.	0.927
HCAG_00944	HCAG_08326	A6QU88	A6RFB0	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.926
HCAG_04603	HCAG_00574	A6R4P5	A6QT68	Transcriptional activator hap3.	Uncharacterized protein.	0.758
HCAG_04603	HCAG_00944	A6R4P5	A6QU88	Transcriptional activator hap3.	CBFD_NFYB_HMF domain-containing protein.	0.927
HCAG_04603	HCAG_06910	A6R4P5	A6R9B9	Transcriptional activator hap3.	CCAAT-binding factor complex subunit HapE.	0.998
HCAG_04603	HCAG_08326	A6R4P5	A6RFB0	Transcriptional activator hap3.	Uncharacterized protein.	0.997
HCAG_06910	HCAG_00574	A6R9B9	A6QT68	CCAAT-binding factor complex subunit HapE.	Uncharacterized protein.	0.852
HCAG_06910	HCAG_04603	A6R9B9	A6R4P5	CCAAT-binding factor complex subunit HapE.	Transcriptional activator hap3.	0.998
HCAG_06910	HCAG_08326	A6R9B9	A6RFB0	CCAAT-binding factor complex subunit HapE.	Uncharacterized protein.	0.996
HCAG_08326	HCAG_00574	A6RFB0	A6QT68	Uncharacterized protein.	Uncharacterized protein.	0.780
HCAG_08326	HCAG_00944	A6RFB0	A6QU88	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.926
HCAG_08326	HCAG_04603	A6RFB0	A6R4P5	Uncharacterized protein.	Transcriptional activator hap3.	0.997
HCAG_08326	HCAG_06910	A6RFB0	A6R9B9	Uncharacterized protein.	CCAAT-binding factor complex subunit HapE.	0.996