(5 nodes) GARP complex network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00180	Vps54 domain-containing protein. (342 aa)
	HCAG_00416	Uncharacterized protein. (1054 aa)
	HCAG_04345	Uncharacterized protein. (271 aa)
	HCAG_04857	Uncharacterized protein. (1321 aa)
	HCAG_06022	Uncharacterized protein. (623 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00180	HCAG_00416	A6QS24	A6QSR0	Vps54 domain-containing protein.	Uncharacterized protein.	0.404
HCAG_00180	HCAG_04345	A6QS24	A6R3Y7	Vps54 domain-containing protein.	Uncharacterized protein.	0.869
HCAG_00180	HCAG_04857	A6QS24	A6R5E9	Vps54 domain-containing protein.	Uncharacterized protein.	0.960
HCAG_00180	HCAG_06022	A6QS24	A6RAN4	Vps54 domain-containing protein.	Uncharacterized protein.	0.947
HCAG_00416	HCAG_00180	A6QSR0	A6QS24	Uncharacterized protein.	Vps54 domain-containing protein.	0.404
HCAG_00416	HCAG_04345	A6QSR0	A6R3Y7	Uncharacterized protein.	Uncharacterized protein.	0.869
HCAG_00416	HCAG_04857	A6QSR0	A6R5E9	Uncharacterized protein.	Uncharacterized protein.	0.973
HCAG_00416	HCAG_06022	A6QSR0	A6RAN4	Uncharacterized protein.	Uncharacterized protein.	0.989
HCAG_04345	HCAG_00180	A6R3Y7	A6QS24	Uncharacterized protein.	Vps54 domain-containing protein.	0.869
HCAG_04345	HCAG_00416	A6R3Y7	A6QSR0	Uncharacterized protein.	Uncharacterized protein.	0.869
HCAG_04345	HCAG_04857	A6R3Y7	A6R5E9	Uncharacterized protein.	Uncharacterized protein.	0.998
HCAG_04345	HCAG_06022	A6R3Y7	A6RAN4	Uncharacterized protein.	Uncharacterized protein.	0.977
HCAG_04857	HCAG_00180	A6R5E9	A6QS24	Uncharacterized protein.	Vps54 domain-containing protein.	0.960
HCAG_04857	HCAG_00416	A6R5E9	A6QSR0	Uncharacterized protein.	Uncharacterized protein.	0.973
HCAG_04857	HCAG_04345	A6R5E9	A6R3Y7	Uncharacterized protein.	Uncharacterized protein.	0.998
HCAG_04857	HCAG_06022	A6R5E9	A6RAN4	Uncharacterized protein.	Uncharacterized protein.	0.987
HCAG_06022	HCAG_00180	A6RAN4	A6QS24	Uncharacterized protein.	Vps54 domain-containing protein.	0.947
HCAG_06022	HCAG_00416	A6RAN4	A6QSR0	Uncharacterized protein.	Uncharacterized protein.	0.989
HCAG_06022	HCAG_04345	A6RAN4	A6R3Y7	Uncharacterized protein.	Uncharacterized protein.	0.977
HCAG_06022	HCAG_04857	A6RAN4	A6R5E9	Uncharacterized protein.	Uncharacterized protein.	0.987