(24 nodes) RNA 5-end processing network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_03189	Uncharacterized protein. (984 aa)
	HCAG_02827	CBF domain-containing protein. (428 aa)
	HCAG_02749	Uncharacterized protein. (227 aa)
	NOP58	Nucleolar protein 58; Required for pre-18S rRNA processing. May bind microtubules (By similarity); Belongs to the NOP5/NOP56 family. (635 aa)
	HCAG_02072	Ribosome biogenesis protein BRX1. (383 aa)
	HCAG_01474	Uncharacterized protein. (92 aa)
	HCAG_00903	Ribonuclease P protein subunit. (240 aa)
	HCAG_00460	Periodic tryptophan protein 2. (935 aa)
	HCAG_00294	Uncharacterized protein. (139 aa)
	HCAG_07649	PINc domain-containing protein. (197 aa)
	HCAG_07279	Uncharacterized protein. (566 aa)
	HCAG_06029	Uncharacterized protein. (900 aa)
	HCAG_05984	Ribosome biogenesis protein BMS1. (1039 aa)
	HCAG_06998	Uncharacterized protein. (381 aa)
	HCAG_06909	Fcf2 domain-containing protein. (238 aa)
	HCAG_05386	Uncharacterized protein. (239 aa)
	HCAG_04935	Uncharacterized protein. (120 aa)
	HCAG_04823	Uncharacterized protein. (675 aa)
	HCAG_04707	WD_REPEATS_REGION domain-containing protein. (961 aa)
	HCAG_04202	WD_REPEATS_REGION domain-containing protein. (957 aa)
	HCAG_04197	WD_REPEATS_REGION domain-containing protein. (641 aa)
	HCAG_03926	Uncharacterized protein. (363 aa)
	HCAG_03776	WD_REPEATS_REGION domain-containing protein. (545 aa)
	HCAG_07280	Uncharacterized protein. (799 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00294	HCAG_00903	A6QSD8	A6QU47	Uncharacterized protein.	Ribonuclease P protein subunit.	0.782
HCAG_00294	HCAG_03189	A6QSD8	A6R0N2	Uncharacterized protein.	Uncharacterized protein.	0.700
HCAG_00294	HCAG_04935	A6QSD8	A6R5M7	Uncharacterized protein.	Uncharacterized protein.	0.794
HCAG_00460	HCAG_00903	A6QSV4	A6QU47	Periodic tryptophan protein 2.	Ribonuclease P protein subunit.	0.423
HCAG_00460	HCAG_02072	A6QSV4	A6QXG5	Periodic tryptophan protein 2.	Ribosome biogenesis protein BRX1.	0.575
HCAG_00460	HCAG_02749	A6QSV4	A6QZE2	Periodic tryptophan protein 2.	Uncharacterized protein.	0.997
HCAG_00460	HCAG_02827	A6QSV4	A6QZM0	Periodic tryptophan protein 2.	CBF domain-containing protein.	0.997
HCAG_00460	HCAG_03776	A6QSV4	A6R2B8	Periodic tryptophan protein 2.	WD_REPEATS_REGION domain-containing protein.	0.998
HCAG_00460	HCAG_04197	A6QSV4	A6R3I9	Periodic tryptophan protein 2.	WD_REPEATS_REGION domain-containing protein.	0.998
HCAG_00460	HCAG_04202	A6QSV4	A6R3J4	Periodic tryptophan protein 2.	WD_REPEATS_REGION domain-containing protein.	0.999
HCAG_00460	HCAG_04707	A6QSV4	A6R4Z9	Periodic tryptophan protein 2.	WD_REPEATS_REGION domain-containing protein.	0.999
HCAG_00460	HCAG_04823	A6QSV4	A6R5B5	Periodic tryptophan protein 2.	Uncharacterized protein.	0.964
HCAG_00460	HCAG_05984	A6QSV4	A6RAJ6	Periodic tryptophan protein 2.	Ribosome biogenesis protein BMS1.	0.998
HCAG_00460	HCAG_06029	A6QSV4	A6RAP1	Periodic tryptophan protein 2.	Uncharacterized protein.	0.982
HCAG_00460	HCAG_06909	A6QSV4	A6R9B8	Periodic tryptophan protein 2.	Fcf2 domain-containing protein.	0.954
HCAG_00460	HCAG_06998	A6QSV4	A6R9K7	Periodic tryptophan protein 2.	Uncharacterized protein.	0.575
HCAG_00460	HCAG_07279	A6QSV4	A6RCC1	Periodic tryptophan protein 2.	Uncharacterized protein.	0.968
HCAG_00460	HCAG_07280	A6QSV4	A6RCC2	Periodic tryptophan protein 2.	Uncharacterized protein.	0.968
HCAG_00460	HCAG_07649	A6QSV4	A6RDE1	Periodic tryptophan protein 2.	PINc domain-containing protein.	0.978
HCAG_00460	NOP58	A6QSV4	A6QYH8	Periodic tryptophan protein 2.	Nucleolar protein 58; Required for pre-18S rRNA processing. May bind microtubules (By similarity); Belongs to the NOP5/NOP56 family.	0.996