(18 nodes) Arginine metabolic process network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_07293	Uncharacterized protein; Belongs to the arginase family. (179 aa)
	HCAG_00035	Arginase; Belongs to the arginase family. (332 aa)
	HCAG_00293	APH domain-containing protein. (322 aa)
	HCAG_01939	Carbamoyl-phosphate synthase arginine-specific small chain, mitochondrial. (471 aa)
	HCAG_02700	Carbamoyl-phosphate synthase arginine-specific large chain. (1182 aa)
	HCAG_02997	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate. (471 aa)
	HCAG_03801	Acetylornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (479 aa)
	HCAG_04217	APH domain-containing protein. (274 aa)
	HCAG_05073	Protein arg-6, mitochondrial; In the N-terminal section; belongs to the acetylglutamate kinase family. (898 aa)
	HCAG_05587	Ornithine carbamoyltransferase, mitochondrial; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (346 aa)
	HCAG_06683	Uncharacterized protein. (410 aa)
	ARG2	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family. (684 aa)
	HCAG_07225	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (229 aa)
	HCAG_07292	Uncharacterized protein; Belongs to the arginase family. (215 aa)
	HCAG_07805	Argininosuccinate lyase. (471 aa)
	HCAG_07844	Ornithine aminotransferase. (458 aa)
	HCAG_09099	APH domain-containing protein. (365 aa)
	HCAG_09191	Uncharacterized protein. (77 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARG2	HCAG_00293	A6RBX7	A6QSD7	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	APH domain-containing protein.	0.680
ARG2	HCAG_01939	A6RBX7	A6QX32	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	Carbamoyl-phosphate synthase arginine-specific small chain, mitochondrial.	0.557
ARG2	HCAG_02700	A6RBX7	A6QZ93	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	Carbamoyl-phosphate synthase arginine-specific large chain.	0.557
ARG2	HCAG_02997	A6RBX7	A6R040	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	0.996
ARG2	HCAG_03801	A6RBX7	A6R2E3	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	Acetylornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.755
ARG2	HCAG_04217	A6RBX7	A6R3K9	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	APH domain-containing protein.	0.680
ARG2	HCAG_05073	A6RBX7	A6R615	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	Protein arg-6, mitochondrial; In the N-terminal section; belongs to the acetylglutamate kinase family.	0.958
ARG2	HCAG_05587	A6RBX7	A6R7H9	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	Ornithine carbamoyltransferase, mitochondrial; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.797
ARG2	HCAG_06683	A6RBX7	A6R8P2	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	Uncharacterized protein.	0.888
ARG2	HCAG_07805	A6RBX7	A6RDU7	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	Argininosuccinate lyase.	0.786
ARG2	HCAG_07844	A6RBX7	A6RDY6	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	Ornithine aminotransferase.	0.712
ARG2	HCAG_09099	A6RBX7	A6RHM9	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	APH domain-containing protein.	0.680
ARG2	HCAG_09191	A6RBX7	A6RHR3	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family.	Uncharacterized protein.	0.680
HCAG_00035	HCAG_00293	A6QRM9	A6QSD7	Arginase; Belongs to the arginase family.	APH domain-containing protein.	0.405
HCAG_00035	HCAG_01939	A6QRM9	A6QX32	Arginase; Belongs to the arginase family.	Carbamoyl-phosphate synthase arginine-specific small chain, mitochondrial.	0.424
HCAG_00035	HCAG_02700	A6QRM9	A6QZ93	Arginase; Belongs to the arginase family.	Carbamoyl-phosphate synthase arginine-specific large chain.	0.428
HCAG_00035	HCAG_02997	A6QRM9	A6R040	Arginase; Belongs to the arginase family.	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	0.932
HCAG_00035	HCAG_03801	A6QRM9	A6R2E3	Arginase; Belongs to the arginase family.	Acetylornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.684
HCAG_00035	HCAG_04217	A6QRM9	A6R3K9	Arginase; Belongs to the arginase family.	APH domain-containing protein.	0.405
HCAG_00035	HCAG_05073	A6QRM9	A6R615	Arginase; Belongs to the arginase family.	Protein arg-6, mitochondrial; In the N-terminal section; belongs to the acetylglutamate kinase family.	0.679