(17 nodes) Nuclear body network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00272	C2H2-type domain-containing protein. (919 aa)
	HCAG_00337	Uncharacterized protein. (285 aa)
	HCAG_00700	zf-C3H1 domain-containing protein. (1222 aa)
	HCAG_01588	YTH domain-containing protein. (774 aa)
	HCAG_01650	UmuC domain-containing protein. (744 aa)
	HCAG_02302	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (594 aa)
	HCAG_03477	Uncharacterized protein. (848 aa)
	HCAG_03239	ENDO3c domain-containing protein. (295 aa)
	HCAG_03214	Uncharacterized protein. (2150 aa)
	HCAG_02832	Uncharacterized protein. (419 aa)
	HCAG_02314	Uncharacterized protein. (1178 aa)
	HCAG_05987	RRM domain-containing protein. (797 aa)
	HCAG_05746	HECT domain-containing protein. (1857 aa)
	HCAG_05461	HRDC domain-containing protein. (807 aa)
	HCAG_05255	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (812 aa)
	HCAG_04655	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (571 aa)
	HCAG_04052	Uncharacterized protein. (430 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00272	HCAG_00700	A6QSB6	A6QTJ4	C2H2-type domain-containing protein.	zf-C3H1 domain-containing protein.	0.521
HCAG_00272	HCAG_04052	A6QSB6	A6R344	C2H2-type domain-containing protein.	Uncharacterized protein.	0.482
HCAG_00272	HCAG_04655	A6QSB6	A6R4U7	C2H2-type domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.544
HCAG_00337	HCAG_01588	A6QSI1	A6QW31	Uncharacterized protein.	YTH domain-containing protein.	0.845
HCAG_00337	HCAG_02302	A6QSI1	A6QY45	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.812
HCAG_00337	HCAG_02314	A6QSI1	A6QY57	Uncharacterized protein.	Uncharacterized protein.	0.718
HCAG_00337	HCAG_04052	A6QSI1	A6R344	Uncharacterized protein.	Uncharacterized protein.	0.894
HCAG_00337	HCAG_04655	A6QSI1	A6R4U7	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.745
HCAG_00700	HCAG_00272	A6QTJ4	A6QSB6	zf-C3H1 domain-containing protein.	C2H2-type domain-containing protein.	0.521
HCAG_00700	HCAG_02302	A6QTJ4	A6QY45	zf-C3H1 domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.807
HCAG_00700	HCAG_02314	A6QTJ4	A6QY57	zf-C3H1 domain-containing protein.	Uncharacterized protein.	0.807
HCAG_00700	HCAG_02832	A6QTJ4	A6QZM5	zf-C3H1 domain-containing protein.	Uncharacterized protein.	0.511
HCAG_00700	HCAG_04052	A6QTJ4	A6R344	zf-C3H1 domain-containing protein.	Uncharacterized protein.	0.782
HCAG_00700	HCAG_05461	A6QTJ4	A6R753	zf-C3H1 domain-containing protein.	HRDC domain-containing protein.	0.556
HCAG_00700	HCAG_05987	A6QTJ4	A6RAJ9	zf-C3H1 domain-containing protein.	RRM domain-containing protein.	0.712
HCAG_01588	HCAG_00337	A6QW31	A6QSI1	YTH domain-containing protein.	Uncharacterized protein.	0.845
HCAG_01588	HCAG_02302	A6QW31	A6QY45	YTH domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.421
HCAG_01588	HCAG_02314	A6QW31	A6QY57	YTH domain-containing protein.	Uncharacterized protein.	0.421
HCAG_02302	HCAG_00337	A6QY45	A6QSI1	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.812
HCAG_02302	HCAG_00700	A6QY45	A6QTJ4	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	zf-C3H1 domain-containing protein.	0.807