(38 nodes) Ribosome assembly network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_06998	Uncharacterized protein. (381 aa)
	HCAG_06035	Ribosomal_S7 domain-containing protein. (419 aa)
	HCAG_07279	Uncharacterized protein. (566 aa)
	HCAG_07280	Uncharacterized protein. (799 aa)
	HCAG_07303	Eukaryotic translation initiation factor 5. (387 aa)
	HCAG_08075	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	HCAG_08665	Uncharacterized protein. (369 aa)
	HCAG_08444	60S ribosomal protein L5. (299 aa)
	HCAG_09043	G domain-containing protein. (539 aa)
	HCAG_00062	Brix domain-containing protein. (380 aa)
	HCAG_00460	Periodic tryptophan protein 2. (935 aa)
	HCAG_00858	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (144 aa)
	HCAG_00977	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (419 aa)
	HCAG_00978	Exonuclease domain-containing protein. (301 aa)
	HCAG_01228	40S ribosomal protein S27. (82 aa)
	HCAG_01442	Uncharacterized protein. (168 aa)
	HCAG_01793	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (204 aa)
	HCAG_02072	Ribosome biogenesis protein BRX1. (383 aa)
	HCAG_02430	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (214 aa)
	HCAG_02502	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (243 aa)
	HCAG_02508	Tr-type G domain-containing protein. (968 aa)
	HCAG_02704	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	HCAG_02709	Uncharacterized protein. (504 aa)
	HCAG_02712	NUFIP1 domain-containing protein. (482 aa)
	HCAG_02761	Brix domain-containing protein. (383 aa)
	HCAG_02882	WD_REPEATS_REGION domain-containing protein. (525 aa)
	HCAG_02945	Uncharacterized protein. (97 aa)
	HCAG_03055	Ribosomal protein L23a. (146 aa)
	HCAG_03278	WD_REPEATS_REGION domain-containing protein. (528 aa)
	HCAG_03553	Uncharacterized protein. (304 aa)
	HCAG_03695	60S ribosomal protein L10-B. (223 aa)
	HCAG_03898	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4863 aa)
	HCAG_04413	Uncharacterized protein. (316 aa)
	HCAG_04575	Ribosomal protein S16. (147 aa)
	HCAG_04823	Uncharacterized protein. (675 aa)
	HCAG_04856	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	HCAG_06361	Uncharacterized protein. (69 aa)
	HCAG_06555	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (194 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00062	HCAG_00460	A6QRQ6	A6QSV4	Brix domain-containing protein.	Periodic tryptophan protein 2.	0.808
HCAG_00062	HCAG_00977	A6QRQ6	A6QUC1	Brix domain-containing protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.813
HCAG_00062	HCAG_00978	A6QRQ6	A6QUC2	Brix domain-containing protein.	Exonuclease domain-containing protein.	0.736
HCAG_00062	HCAG_02072	A6QRQ6	A6QXG5	Brix domain-containing protein.	Ribosome biogenesis protein BRX1.	0.782
HCAG_00062	HCAG_02502	A6QRQ6	A6QYP5	Brix domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.841
HCAG_00062	HCAG_02761	A6QRQ6	A6QZF4	Brix domain-containing protein.	Brix domain-containing protein.	0.938
HCAG_00062	HCAG_02945	A6QRQ6	A6QZY8	Brix domain-containing protein.	Uncharacterized protein.	0.741
HCAG_00062	HCAG_03278	A6QRQ6	A6R0X1	Brix domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.501
HCAG_00062	HCAG_04413	A6QRQ6	A6R455	Brix domain-containing protein.	Uncharacterized protein.	0.639
HCAG_00062	HCAG_04823	A6QRQ6	A6R5B5	Brix domain-containing protein.	Uncharacterized protein.	0.660
HCAG_00062	HCAG_04856	A6QRQ6	A6R5E8	Brix domain-containing protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.587
HCAG_00062	HCAG_06555	A6QRQ6	A6R8B4	Brix domain-containing protein.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.773
HCAG_00062	HCAG_06998	A6QRQ6	A6R9K7	Brix domain-containing protein.	Uncharacterized protein.	0.782
HCAG_00062	HCAG_07279	A6QRQ6	A6RCC1	Brix domain-containing protein.	Uncharacterized protein.	0.577
HCAG_00062	HCAG_07280	A6QRQ6	A6RCC2	Brix domain-containing protein.	Uncharacterized protein.	0.577
HCAG_00062	HCAG_09043	A6QRQ6	A6RHC6	Brix domain-containing protein.	G domain-containing protein.	0.588
HCAG_00460	HCAG_00062	A6QSV4	A6QRQ6	Periodic tryptophan protein 2.	Brix domain-containing protein.	0.808
HCAG_00460	HCAG_00977	A6QSV4	A6QUC1	Periodic tryptophan protein 2.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.493
HCAG_00460	HCAG_01228	A6QSV4	A6QV21	Periodic tryptophan protein 2.	40S ribosomal protein S27.	0.919
HCAG_00460	HCAG_01442	A6QSV4	A6QVN5	Periodic tryptophan protein 2.	Uncharacterized protein.	0.903