(22 nodes) sno(s)RNA processing network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_02314	Uncharacterized protein. (1178 aa)
	HCAG_00700	zf-C3H1 domain-containing protein. (1222 aa)
	HCAG_01190	Uncharacterized protein. (249 aa)
	HCAG_02152	Uncharacterized protein. (925 aa)
	HCAG_02302	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (594 aa)
	HCAG_02340	Fibrillarin. (213 aa)
	NOP58	Nucleolar protein 58; Required for pre-18S rRNA processing. May bind microtubules (By similarity); Belongs to the NOP5/NOP56 family. (635 aa)
	HCAG_02941	Uncharacterized protein. (306 aa)
	HCAG_03047	Centromere/microtubule-binding protein cbf5. (400 aa)
	HCAG_03189	Uncharacterized protein. (984 aa)
	HCAG_03457	ECR1_N domain-containing protein. (372 aa)
	HCAG_03557	HAD_SAK_1 domain-containing protein. (586 aa)
	HCAG_04484	RNase_PH domain-containing protein. (291 aa)
	HCAG_04935	Uncharacterized protein. (120 aa)
	HCAG_05386	Uncharacterized protein. (239 aa)
	HCAG_05387	KH_dom_type_1 domain-containing protein. (279 aa)
	HCAG_05461	HRDC domain-containing protein. (807 aa)
	HCAG_06916	RNase III domain-containing protein. (380 aa)
	HCAG_06979	RRM domain-containing protein. (588 aa)
	HCAG_06980	CID domain-containing protein. (131 aa)
	HCAG_07214	Uncharacterized protein. (252 aa)
	HCAG_08845	Plus3 domain-containing protein. (637 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00700	HCAG_02302	A6QTJ4	A6QY45	zf-C3H1 domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.807
HCAG_00700	HCAG_02314	A6QTJ4	A6QY57	zf-C3H1 domain-containing protein.	Uncharacterized protein.	0.807
HCAG_00700	HCAG_05461	A6QTJ4	A6R753	zf-C3H1 domain-containing protein.	HRDC domain-containing protein.	0.556
HCAG_01190	HCAG_02340	A6QUY4	A6QY83	Uncharacterized protein.	Fibrillarin.	0.814
HCAG_01190	HCAG_03457	A6QUY4	A6R1F0	Uncharacterized protein.	ECR1_N domain-containing protein.	0.997
HCAG_01190	HCAG_04484	A6QUY4	A6R4C6	Uncharacterized protein.	RNase_PH domain-containing protein.	0.982
HCAG_01190	HCAG_05387	A6QUY4	A6R6X9	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.984
HCAG_01190	HCAG_07214	A6QUY4	A6RC56	Uncharacterized protein.	Uncharacterized protein.	0.997
HCAG_01190	NOP58	A6QUY4	A6QYH8	Uncharacterized protein.	Nucleolar protein 58; Required for pre-18S rRNA processing. May bind microtubules (By similarity); Belongs to the NOP5/NOP56 family.	0.877
HCAG_02152	HCAG_02302	A6QXP5	A6QY45	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.962
HCAG_02152	HCAG_02314	A6QXP5	A6QY57	Uncharacterized protein.	Uncharacterized protein.	0.943
HCAG_02152	HCAG_05387	A6QXP5	A6R6X9	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.434
HCAG_02302	HCAG_00700	A6QY45	A6QTJ4	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	zf-C3H1 domain-containing protein.	0.807
HCAG_02302	HCAG_02152	A6QY45	A6QXP5	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.962
HCAG_02314	HCAG_00700	A6QY57	A6QTJ4	Uncharacterized protein.	zf-C3H1 domain-containing protein.	0.807
HCAG_02314	HCAG_02152	A6QY57	A6QXP5	Uncharacterized protein.	Uncharacterized protein.	0.943
HCAG_02340	HCAG_01190	A6QY83	A6QUY4	Fibrillarin.	Uncharacterized protein.	0.814
HCAG_02340	HCAG_03047	A6QY83	A6R090	Fibrillarin.	Centromere/microtubule-binding protein cbf5.	0.996
HCAG_02340	HCAG_03457	A6QY83	A6R1F0	Fibrillarin.	ECR1_N domain-containing protein.	0.805
HCAG_02340	HCAG_04484	A6QY83	A6R4C6	Fibrillarin.	RNase_PH domain-containing protein.	0.818