(8 nodes) Nuclear-transcribed mRNA catabolic process, 3-5 exonucleolytic nonsense-mediated decay network (Histoplasma capsulatum NAm1)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_02005	WD_REPEATS_REGION domain-containing protein. (326 aa)
	HCAG_03200	RNase_PH domain-containing protein. (440 aa)
	HCAG_03838	Uncharacterized protein. (1155 aa)
	HCAG_04344	Uncharacterized protein. (1313 aa)
	HCAG_04484	RNase_PH domain-containing protein. (291 aa)
	HCAG_05940	RNase_PH domain-containing protein. (337 aa)
	HCAG_07214	Uncharacterized protein. (252 aa)
	HCAG_08172	Antiviral helicase SKI2. (1298 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_02005	HCAG_03200	A6QX98	A6R0P3	WD_REPEATS_REGION domain-containing protein.	RNase_PH domain-containing protein.	0.701
HCAG_02005	HCAG_04344	A6QX98	A6R3Y6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
HCAG_02005	HCAG_04484	A6QX98	A6R4C6	WD_REPEATS_REGION domain-containing protein.	RNase_PH domain-containing protein.	0.804
HCAG_02005	HCAG_07214	A6QX98	A6RC56	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.781
HCAG_02005	HCAG_08172	A6QX98	A6REV7	WD_REPEATS_REGION domain-containing protein.	Antiviral helicase SKI2.	0.999
HCAG_03200	HCAG_02005	A6R0P3	A6QX98	RNase_PH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.701
HCAG_03200	HCAG_04344	A6R0P3	A6R3Y6	RNase_PH domain-containing protein.	Uncharacterized protein.	0.746
HCAG_03200	HCAG_04484	A6R0P3	A6R4C6	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
HCAG_03200	HCAG_05940	A6R0P3	A6RAF2	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
HCAG_03200	HCAG_07214	A6R0P3	A6RC56	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
HCAG_03200	HCAG_08172	A6R0P3	A6REV7	RNase_PH domain-containing protein.	Antiviral helicase SKI2.	0.913
HCAG_04344	HCAG_02005	A6R3Y6	A6QX98	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
HCAG_04344	HCAG_03200	A6R3Y6	A6R0P3	Uncharacterized protein.	RNase_PH domain-containing protein.	0.746
HCAG_04344	HCAG_04484	A6R3Y6	A6R4C6	Uncharacterized protein.	RNase_PH domain-containing protein.	0.846
HCAG_04344	HCAG_05940	A6R3Y6	A6RAF2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.823
HCAG_04344	HCAG_07214	A6R3Y6	A6RC56	Uncharacterized protein.	Uncharacterized protein.	0.873
HCAG_04344	HCAG_08172	A6R3Y6	A6REV7	Uncharacterized protein.	Antiviral helicase SKI2.	0.999
HCAG_04484	HCAG_02005	A6R4C6	A6QX98	RNase_PH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.804
HCAG_04484	HCAG_03200	A6R4C6	A6R0P3	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
HCAG_04484	HCAG_04344	A6R4C6	A6R3Y6	RNase_PH domain-containing protein.	Uncharacterized protein.	0.846