(11 nodes) Nuclear-transcribed mRNA catabolic process, non-stop decay network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_03200	RNase_PH domain-containing protein. (440 aa)
	HCAG_08172	Antiviral helicase SKI2. (1298 aa)
	HCAG_07214	Uncharacterized protein. (252 aa)
	HCAG_05940	RNase_PH domain-containing protein. (337 aa)
	HCAG_06423	Sec2p domain-containing protein. (252 aa)
	HCAG_04914	Histone H2A; Belongs to the histone H2A family. (138 aa)
	HCAG_04572	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (417 aa)
	HCAG_04484	RNase_PH domain-containing protein. (291 aa)
	HCAG_04344	Uncharacterized protein. (1313 aa)
	HCAG_02509	Uncharacterized protein. (289 aa)
	HCAG_02005	WD_REPEATS_REGION domain-containing protein. (326 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_02005	HCAG_02509	A6QX98	A6QYQ2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.725
HCAG_02005	HCAG_03200	A6QX98	A6R0P3	WD_REPEATS_REGION domain-containing protein.	RNase_PH domain-containing protein.	0.701
HCAG_02005	HCAG_04344	A6QX98	A6R3Y6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
HCAG_02005	HCAG_04484	A6QX98	A6R4C6	WD_REPEATS_REGION domain-containing protein.	RNase_PH domain-containing protein.	0.804
HCAG_02005	HCAG_06423	A6QX98	A6R7Y2	WD_REPEATS_REGION domain-containing protein.	Sec2p domain-containing protein.	0.725
HCAG_02005	HCAG_07214	A6QX98	A6RC56	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.781
HCAG_02005	HCAG_08172	A6QX98	A6REV7	WD_REPEATS_REGION domain-containing protein.	Antiviral helicase SKI2.	0.999
HCAG_02509	HCAG_02005	A6QYQ2	A6QX98	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.725
HCAG_02509	HCAG_03200	A6QYQ2	A6R0P3	Uncharacterized protein.	RNase_PH domain-containing protein.	0.998
HCAG_02509	HCAG_04344	A6QYQ2	A6R3Y6	Uncharacterized protein.	Uncharacterized protein.	0.766
HCAG_02509	HCAG_04484	A6QYQ2	A6R4C6	Uncharacterized protein.	RNase_PH domain-containing protein.	0.996
HCAG_02509	HCAG_05940	A6QYQ2	A6RAF2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.998
HCAG_02509	HCAG_07214	A6QYQ2	A6RC56	Uncharacterized protein.	Uncharacterized protein.	0.997
HCAG_02509	HCAG_08172	A6QYQ2	A6REV7	Uncharacterized protein.	Antiviral helicase SKI2.	0.872
HCAG_03200	HCAG_02005	A6R0P3	A6QX98	RNase_PH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.701
HCAG_03200	HCAG_02509	A6R0P3	A6QYQ2	RNase_PH domain-containing protein.	Uncharacterized protein.	0.998
HCAG_03200	HCAG_04344	A6R0P3	A6R3Y6	RNase_PH domain-containing protein.	Uncharacterized protein.	0.746
HCAG_03200	HCAG_04484	A6R0P3	A6R4C6	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
HCAG_03200	HCAG_05940	A6R0P3	A6RAF2	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
HCAG_03200	HCAG_06423	A6R0P3	A6R7Y2	RNase_PH domain-containing protein.	Sec2p domain-containing protein.	0.963