(6 nodes) Protein K11-linked ubiquitination network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_02275	Uncharacterized protein. (770 aa)
	HCAG_03711	APC2 domain-containing protein. (175 aa)
	HCAG_03710	Uncharacterized protein. (394 aa)
	HCAG_02261	DOC domain-containing protein. (403 aa)
	HCAG_01274	Uncharacterized protein. (1005 aa)
	HCAG_01177	ANAPC5 domain-containing protein. (502 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_01177	HCAG_01274	A6QUX1	A6QV67	ANAPC5 domain-containing protein.	Uncharacterized protein.	0.999
HCAG_01177	HCAG_02261	A6QUX1	A6QY04	ANAPC5 domain-containing protein.	DOC domain-containing protein.	0.999
HCAG_01177	HCAG_02275	A6QUX1	A6QY18	ANAPC5 domain-containing protein.	Uncharacterized protein.	0.999
HCAG_01177	HCAG_03710	A6QUX1	A6R252	ANAPC5 domain-containing protein.	Uncharacterized protein.	0.946
HCAG_01177	HCAG_03711	A6QUX1	A6R253	ANAPC5 domain-containing protein.	APC2 domain-containing protein.	0.946
HCAG_01274	HCAG_01177	A6QV67	A6QUX1	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.999
HCAG_01274	HCAG_02261	A6QV67	A6QY04	Uncharacterized protein.	DOC domain-containing protein.	0.999
HCAG_01274	HCAG_02275	A6QV67	A6QY18	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_01274	HCAG_03710	A6QV67	A6R252	Uncharacterized protein.	Uncharacterized protein.	0.948
HCAG_01274	HCAG_03711	A6QV67	A6R253	Uncharacterized protein.	APC2 domain-containing protein.	0.948
HCAG_02261	HCAG_01177	A6QY04	A6QUX1	DOC domain-containing protein.	ANAPC5 domain-containing protein.	0.999
HCAG_02261	HCAG_01274	A6QY04	A6QV67	DOC domain-containing protein.	Uncharacterized protein.	0.999
HCAG_02261	HCAG_02275	A6QY04	A6QY18	DOC domain-containing protein.	Uncharacterized protein.	0.999
HCAG_02261	HCAG_03710	A6QY04	A6R252	DOC domain-containing protein.	Uncharacterized protein.	0.948
HCAG_02261	HCAG_03711	A6QY04	A6R253	DOC domain-containing protein.	APC2 domain-containing protein.	0.948
HCAG_02275	HCAG_01177	A6QY18	A6QUX1	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.999
HCAG_02275	HCAG_01274	A6QY18	A6QV67	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_02275	HCAG_02261	A6QY18	A6QY04	Uncharacterized protein.	DOC domain-containing protein.	0.999
HCAG_02275	HCAG_03710	A6QY18	A6R252	Uncharacterized protein.	Uncharacterized protein.	0.960
HCAG_02275	HCAG_03711	A6QY18	A6R253	Uncharacterized protein.	APC2 domain-containing protein.	0.948