(9 nodes) Cellular response to amino acid stimulus network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_06384	Uncharacterized protein. (114 aa)
	HCAG_09023	Uncharacterized protein. (367 aa)
	HCAG_02188	Uncharacterized protein. (292 aa)
	HCAG_05298	Uncharacterized protein. (365 aa)
	HCAG_00444	Methyltranfer_dom domain-containing protein. (463 aa)
	HCAG_00620	Uncharacterized protein. (338 aa)
	HCAG_05299	Uncharacterized protein. (189 aa)
	HCAG_05366	WD-repeat protein mip1. (1331 aa)
	HCAG_05737	Uncharacterized protein. (170 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00620	HCAG_02188	A6QTB4	A6QXT1	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_00620	HCAG_05366	A6QTB4	A6R6V8	Uncharacterized protein.	WD-repeat protein mip1.	0.989
HCAG_00620	HCAG_05737	A6QTB4	A6R9U9	Uncharacterized protein.	Uncharacterized protein.	0.853
HCAG_00620	HCAG_06384	A6QTB4	A6R7U3	Uncharacterized protein.	Uncharacterized protein.	0.853
HCAG_00620	HCAG_09023	A6QTB4	A6RHA6	Uncharacterized protein.	Uncharacterized protein.	0.853
HCAG_02188	HCAG_00620	A6QXT1	A6QTB4	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_02188	HCAG_05366	A6QXT1	A6R6V8	Uncharacterized protein.	WD-repeat protein mip1.	0.982
HCAG_02188	HCAG_05737	A6QXT1	A6R9U9	Uncharacterized protein.	Uncharacterized protein.	0.842
HCAG_02188	HCAG_06384	A6QXT1	A6R7U3	Uncharacterized protein.	Uncharacterized protein.	0.842
HCAG_02188	HCAG_09023	A6QXT1	A6RHA6	Uncharacterized protein.	Uncharacterized protein.	0.842
HCAG_05298	HCAG_05299	A6R6P0	A6R6P1	Uncharacterized protein.	Uncharacterized protein.	0.732
HCAG_05299	HCAG_05298	A6R6P1	A6R6P0	Uncharacterized protein.	Uncharacterized protein.	0.732
HCAG_05366	HCAG_00620	A6R6V8	A6QTB4	WD-repeat protein mip1.	Uncharacterized protein.	0.989
HCAG_05366	HCAG_02188	A6R6V8	A6QXT1	WD-repeat protein mip1.	Uncharacterized protein.	0.982
HCAG_05366	HCAG_05737	A6R6V8	A6R9U9	WD-repeat protein mip1.	Uncharacterized protein.	0.830
HCAG_05366	HCAG_06384	A6R6V8	A6R7U3	WD-repeat protein mip1.	Uncharacterized protein.	0.830
HCAG_05366	HCAG_09023	A6R6V8	A6RHA6	WD-repeat protein mip1.	Uncharacterized protein.	0.830
HCAG_05737	HCAG_00620	A6R9U9	A6QTB4	Uncharacterized protein.	Uncharacterized protein.	0.853
HCAG_05737	HCAG_02188	A6R9U9	A6QXT1	Uncharacterized protein.	Uncharacterized protein.	0.842
HCAG_05737	HCAG_05366	A6R9U9	A6R6V8	Uncharacterized protein.	WD-repeat protein mip1.	0.830