(9 nodes) Nucleolar ribonuclease P complex network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_05060	Uncharacterized protein. (206 aa)
	HCAG_03189	Uncharacterized protein. (984 aa)
	HCAG_02762	Uncharacterized protein. (316 aa)
	HCAG_00028	NB-ARC domain-containing protein. (1316 aa)
	HCAG_07502	Uncharacterized protein. (1125 aa)
	HCAG_08374	Uncharacterized protein. (151 aa)
	HCAG_07501	Uncharacterized protein. (281 aa)
	HCAG_05386	Uncharacterized protein. (239 aa)
	HCAG_04935	Uncharacterized protein. (120 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_02762	HCAG_03189	A6QZF5	A6R0N2	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_02762	HCAG_04935	A6QZF5	A6R5M7	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_02762	HCAG_05060	A6QZF5	A6R602	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_02762	HCAG_05386	A6QZF5	A6R6X8	Uncharacterized protein.	Uncharacterized protein.	0.997
HCAG_02762	HCAG_08374	A6QZF5	A6RFF8	Uncharacterized protein.	Uncharacterized protein.	0.900
HCAG_03189	HCAG_02762	A6R0N2	A6QZF5	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_03189	HCAG_04935	A6R0N2	A6R5M7	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_03189	HCAG_05060	A6R0N2	A6R602	Uncharacterized protein.	Uncharacterized protein.	0.998
HCAG_03189	HCAG_05386	A6R0N2	A6R6X8	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_03189	HCAG_08374	A6R0N2	A6RFF8	Uncharacterized protein.	Uncharacterized protein.	0.900
HCAG_04935	HCAG_02762	A6R5M7	A6QZF5	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_04935	HCAG_03189	A6R5M7	A6R0N2	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_04935	HCAG_05060	A6R5M7	A6R602	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_04935	HCAG_05386	A6R5M7	A6R6X8	Uncharacterized protein.	Uncharacterized protein.	0.998
HCAG_04935	HCAG_08374	A6R5M7	A6RFF8	Uncharacterized protein.	Uncharacterized protein.	0.900
HCAG_05060	HCAG_02762	A6R602	A6QZF5	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_05060	HCAG_03189	A6R602	A6R0N2	Uncharacterized protein.	Uncharacterized protein.	0.998
HCAG_05060	HCAG_04935	A6R602	A6R5M7	Uncharacterized protein.	Uncharacterized protein.	0.999
HCAG_05060	HCAG_05386	A6R602	A6R6X8	Uncharacterized protein.	Uncharacterized protein.	0.983
HCAG_05060	HCAG_08374	A6R602	A6RFF8	Uncharacterized protein.	Uncharacterized protein.	0.906