(52 nodes) Small ribosomal subunit network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_07961	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (258 aa)
	HCAG_08073	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	HCAG_08075	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	HCAG_02272	40S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	HCAG_02704	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	HCAG_02915	Arf-GAP domain-containing protein. (382 aa)
	HCAG_02186	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (98 aa)
	HCAG_08092	40S ribosomal protein S17. (142 aa)
	HCAG_01681	Uncharacterized protein. (312 aa)
	HCAG_01666	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (237 aa)
	HCAG_00858	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (144 aa)
	HCAG_00952	Uncharacterized protein. (208 aa)
	HCAG_01228	40S ribosomal protein S27. (82 aa)
	HCAG_05505	Uncharacterized protein. (424 aa)
	HCAG_05528	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)
	RSM25	37S ribosomal protein S25, mitochondrial. (277 aa)
	HCAG_06361	Uncharacterized protein. (69 aa)
	HCAG_07812	Uncharacterized protein. (355 aa)
	HCAG_07992	Uncharacterized protein. (602 aa)
	HCAG_00148	Uncharacterized protein. (534 aa)
	HCAG_00733	Uncharacterized protein. (396 aa)
	HCAG_04749	Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated. (415 aa)
	HCAG_04575	Ribosomal protein S16. (147 aa)
	HCAG_04498	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (88 aa)
	HCAG_04418	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	HCAG_04214	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (92 aa)
	HCAG_03649	Uncharacterized protein. (56 aa)
	HCAG_01253	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (687 aa)
	HCAG_01442	Uncharacterized protein. (168 aa)
	HCAG_06367	Uncharacterized protein. (503 aa)
	HCAG_06035	Ribosomal_S7 domain-containing protein. (419 aa)
	HCAG_06566	Ubiquitin/79aa fusion protein. (154 aa)
	HCAG_06613	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
	HCAG_06812	Uncharacterized protein. (321 aa)
	HCAG_05873	Uncharacterized protein. (492 aa)
	HCAG_06917	Uncharacterized protein. (107 aa)
	HCAG_06907	Ribosomal_S10 domain-containing protein. (261 aa)
	HCAG_01362	S4 RNA-binding domain-containing protein. (453 aa)
	HCAG_03647	Uncharacterized protein. (191 aa)
	HCAG_03471	Uncharacterized protein. (158 aa)
	HCAG_03168	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (62 aa)
	HCAG_00850	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (418 aa)
	HCAG_08204	Uncharacterized protein. (255 aa)
	HCAG_08235	40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family. (312 aa)
	HCAG_06038	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (141 aa)
	HCAG_06308	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (151 aa)
	HCAG_07055	MRP-S28 domain-containing protein. (225 aa)
	HCAG_07249	40S ribosomal protein S9. (178 aa)
	HCAG_07773	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (161 aa)
	HCAG_07782	Uncharacterized protein. (169 aa)
	HCAG_05231	40S ribosomal protein S10-A. (166 aa)
	HCAG_05379	Uncharacterized protein. (113 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00148	HCAG_00850	A6QRZ2	A6QTZ4	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.799
HCAG_00148	HCAG_00952	A6QRZ2	A6QU96	Uncharacterized protein.	Uncharacterized protein.	0.867
HCAG_00148	HCAG_01228	A6QRZ2	A6QV21	Uncharacterized protein.	40S ribosomal protein S27.	0.981
HCAG_00148	HCAG_01362	A6QRZ2	A6QVF5	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.945
HCAG_00148	HCAG_01442	A6QRZ2	A6QVN5	Uncharacterized protein.	Uncharacterized protein.	0.797
HCAG_00148	HCAG_01666	A6QRZ2	A6QWA9	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.986
HCAG_00148	HCAG_01681	A6QRZ2	A6QWC4	Uncharacterized protein.	Uncharacterized protein.	0.951
HCAG_00148	HCAG_02186	A6QRZ2	A6QXS9	Uncharacterized protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.985
HCAG_00148	HCAG_02272	A6QRZ2	A6QY15	Uncharacterized protein.	40S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family.	0.982
HCAG_00148	HCAG_02704	A6QRZ2	A6QZ97	Uncharacterized protein.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.988
HCAG_00148	HCAG_03168	A6QRZ2	A6R0L1	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.961
HCAG_00148	HCAG_03649	A6QRZ2	A6R1Z1	Uncharacterized protein.	Uncharacterized protein.	0.984
HCAG_00148	HCAG_04214	A6QRZ2	A6R3K6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.947
HCAG_00148	HCAG_04418	A6QRZ2	A6R460	Uncharacterized protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.972
HCAG_00148	HCAG_04498	A6QRZ2	A6R4E0	Uncharacterized protein.	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.	0.813
HCAG_00148	HCAG_04575	A6QRZ2	A6R4L7	Uncharacterized protein.	Ribosomal protein S16.	0.986
HCAG_00148	HCAG_05231	A6QRZ2	A6R6H3	Uncharacterized protein.	40S ribosomal protein S10-A.	0.987
HCAG_00148	HCAG_05379	A6QRZ2	A6R6X1	Uncharacterized protein.	Uncharacterized protein.	0.806
HCAG_00148	HCAG_05505	A6QRZ2	A6R797	Uncharacterized protein.	Uncharacterized protein.	0.909
HCAG_00148	HCAG_05528	A6QRZ2	A6R7C0	Uncharacterized protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.984