(18 nodes) Small-subunit processome network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_03549	WD_REPEATS_REGION domain-containing protein. (1029 aa)
	HCAG_03776	WD_REPEATS_REGION domain-containing protein. (545 aa)
	HCAG_04197	WD_REPEATS_REGION domain-containing protein. (641 aa)
	HCAG_05164	Uncharacterized protein. (1175 aa)
	HCAG_05783	Uncharacterized protein. (521 aa)
	HCAG_05902	Uncharacterized protein. (2307 aa)
	HCAG_06029	Uncharacterized protein. (900 aa)
	HCAG_07125	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (334 aa)
	HCAG_07280	Uncharacterized protein. (799 aa)
	HCAG_01076	RNA helicase. (721 aa)
	HCAG_01788	Sas10 domain-containing protein. (737 aa)
	HCAG_01957	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (621 aa)
	HCAG_02358	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (268 aa)
	HCAG_02441	WD_REPEATS_REGION domain-containing protein. (328 aa)
	HCAG_02456	Uncharacterized protein. (955 aa)
	HCAG_07961	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (258 aa)
	HCAG_07649	PINc domain-containing protein. (197 aa)
	HCAG_07279	Uncharacterized protein. (566 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_01076	HCAG_01788	A6QUM0	A6QWN1	RNA helicase.	Sas10 domain-containing protein.	0.977
HCAG_01076	HCAG_01957	A6QUM0	A6QX50	RNA helicase.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.642
HCAG_01076	HCAG_02358	A6QUM0	A6QYA1	RNA helicase.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.554
HCAG_01076	HCAG_02441	A6QUM0	A6QYI4	RNA helicase.	WD_REPEATS_REGION domain-containing protein.	0.577
HCAG_01076	HCAG_03549	A6QUM0	A6R1P1	RNA helicase.	WD_REPEATS_REGION domain-containing protein.	0.691
HCAG_01076	HCAG_03776	A6QUM0	A6R2B8	RNA helicase.	WD_REPEATS_REGION domain-containing protein.	0.857
HCAG_01076	HCAG_04197	A6QUM0	A6R3I9	RNA helicase.	WD_REPEATS_REGION domain-containing protein.	0.608
HCAG_01076	HCAG_05164	A6QUM0	A6R6A6	RNA helicase.	Uncharacterized protein.	0.890
HCAG_01076	HCAG_05783	A6QUM0	A6R9Z5	RNA helicase.	Uncharacterized protein.	0.910
HCAG_01076	HCAG_05902	A6QUM0	A6RAB4	RNA helicase.	Uncharacterized protein.	0.752
HCAG_01076	HCAG_06029	A6QUM0	A6RAP1	RNA helicase.	Uncharacterized protein.	0.993
HCAG_01076	HCAG_07125	A6QUM0	A6RBW7	RNA helicase.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.788
HCAG_01076	HCAG_07279	A6QUM0	A6RCC1	RNA helicase.	Uncharacterized protein.	0.825
HCAG_01076	HCAG_07280	A6QUM0	A6RCC2	RNA helicase.	Uncharacterized protein.	0.825
HCAG_01076	HCAG_07649	A6QUM0	A6RDE1	RNA helicase.	PINc domain-containing protein.	0.541
HCAG_01788	HCAG_01076	A6QWN1	A6QUM0	Sas10 domain-containing protein.	RNA helicase.	0.977
HCAG_01788	HCAG_01957	A6QWN1	A6QX50	Sas10 domain-containing protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.998
HCAG_01788	HCAG_02358	A6QWN1	A6QYA1	Sas10 domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.999
HCAG_01788	HCAG_02441	A6QWN1	A6QYI4	Sas10 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
HCAG_01788	HCAG_02456	A6QWN1	A6QYJ9	Sas10 domain-containing protein.	Uncharacterized protein.	0.524