(8 nodes) Seh1-associated complex network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00444	Methyltranfer_dom domain-containing protein. (463 aa)
	HCAG_00937	DEP domain-containing protein. (1754 aa)
	HCAG_01451	Uncharacterized protein. (684 aa)
	HCAG_03162	Uncharacterized protein. (1474 aa)
	HCAG_03601	Uncharacterized protein. (521 aa)
	HCAG_04554	WD_REPEATS_REGION domain-containing protein. (979 aa)
	HCAG_04555	Uncharacterized protein. (300 aa)
	HCAG_06286	Uncharacterized protein. (1211 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00444	HCAG_03162	A6QST8	A6R0K5	Methyltranfer_dom domain-containing protein.	Uncharacterized protein.	0.492
HCAG_00444	HCAG_04554	A6QST8	A6R4J6	Methyltranfer_dom domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.409
HCAG_00444	HCAG_04555	A6QST8	A6R4J7	Methyltranfer_dom domain-containing protein.	Uncharacterized protein.	0.409
HCAG_00444	HCAG_06286	A6QST8	A6RBE8	Methyltranfer_dom domain-containing protein.	Uncharacterized protein.	0.656
HCAG_00937	HCAG_01451	A6QU81	A6QVP4	DEP domain-containing protein.	Uncharacterized protein.	0.999
HCAG_00937	HCAG_03162	A6QU81	A6R0K5	DEP domain-containing protein.	Uncharacterized protein.	0.997
HCAG_00937	HCAG_03601	A6QU81	A6R1U3	DEP domain-containing protein.	Uncharacterized protein.	0.997
HCAG_00937	HCAG_04554	A6QU81	A6R4J6	DEP domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.946
HCAG_00937	HCAG_04555	A6QU81	A6R4J7	DEP domain-containing protein.	Uncharacterized protein.	0.957
HCAG_00937	HCAG_06286	A6QU81	A6RBE8	DEP domain-containing protein.	Uncharacterized protein.	0.997
HCAG_01451	HCAG_00937	A6QVP4	A6QU81	Uncharacterized protein.	DEP domain-containing protein.	0.999
HCAG_01451	HCAG_03162	A6QVP4	A6R0K5	Uncharacterized protein.	Uncharacterized protein.	0.997
HCAG_01451	HCAG_03601	A6QVP4	A6R1U3	Uncharacterized protein.	Uncharacterized protein.	0.998
HCAG_01451	HCAG_04554	A6QVP4	A6R4J6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.945
HCAG_01451	HCAG_04555	A6QVP4	A6R4J7	Uncharacterized protein.	Uncharacterized protein.	0.945
HCAG_01451	HCAG_06286	A6QVP4	A6RBE8	Uncharacterized protein.	Uncharacterized protein.	0.976
HCAG_03162	HCAG_00444	A6R0K5	A6QST8	Uncharacterized protein.	Methyltranfer_dom domain-containing protein.	0.492
HCAG_03162	HCAG_00937	A6R0K5	A6QU81	Uncharacterized protein.	DEP domain-containing protein.	0.997
HCAG_03162	HCAG_01451	A6R0K5	A6QVP4	Uncharacterized protein.	Uncharacterized protein.	0.997
HCAG_03162	HCAG_03601	A6R0K5	A6R1U3	Uncharacterized protein.	Uncharacterized protein.	0.997