(39 nodes) Zinc finger, CCHC-type network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_07044	Uncharacterized protein. (657 aa)
	HCAG_03631	Uncharacterized protein. (1329 aa)
	HCAG_03629	Uncharacterized protein. (1496 aa)
	HCAG_03214	Uncharacterized protein. (2150 aa)
	HCAG_03155	Uncharacterized protein. (1765 aa)
	HCAG_03066	Uncharacterized protein. (1776 aa)
	HCAG_02693	Uncharacterized protein. (1683 aa)
	HCAG_05001	Uncharacterized protein. (1390 aa)
	HCAG_06696	CCHC-type domain-containing protein. (475 aa)
	HCAG_06705	Uncharacterized protein. (1196 aa)
	HCAG_07003	Uncharacterized protein. (1315 aa)
	HCAG_06117	CCHC-type domain-containing protein. (983 aa)
	HCAG_06314	Uncharacterized protein. (1545 aa)
	HCAG_07026	Uncharacterized protein. (251 aa)
	HCAG_02056	Uncharacterized protein. (191 aa)
	HCAG_07448	Uncharacterized protein. (1838 aa)
	HCAG_07769	Uncharacterized protein. (1306 aa)
	HCAG_07942	Uncharacterized protein. (1742 aa)
	HCAG_08132	Uncharacterized protein. (1765 aa)
	HCAG_08412	Uncharacterized protein. (1163 aa)
	HCAG_08571	CCHC-type domain-containing protein. (347 aa)
	HCAG_08913	Uncharacterized protein. (1307 aa)
	HCAG_09070	Uncharacterized protein. (987 aa)
	HCAG_03740	CCHC-type domain-containing protein. (804 aa)
	HCAG_03739	Uncharacterized protein. (1618 aa)
	HCAG_03958	CCHC-type domain-containing protein. (347 aa)
	HCAG_04105	Uncharacterized protein. (1481 aa)
	HCAG_04415	Uncharacterized protein. (221 aa)
	HCAG_04640	Uncharacterized protein. (1373 aa)
	HCAG_04880	Nucleolar protein NOP2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (1980 aa)
	HCAG_01460	Uncharacterized protein. (1414 aa)
	HCAG_01801	Uncharacterized protein. (865 aa)
	HCAG_00137	CCHC-type domain-containing protein. (124 aa)
	HCAG_00222	Uncharacterized protein. (1395 aa)
	HCAG_02036	Uncharacterized protein. (524 aa)
	HCAG_00263	Uncharacterized protein. (1758 aa)
	HCAG_00292	Uncharacterized protein. (1390 aa)
	HCAG_01180	Uncharacterized protein. (964 aa)
	HCAG_01418	CCHC-type domain-containing protein. (620 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_02056	HCAG_07026	A6QXE9	A6RBL8	Uncharacterized protein.	Uncharacterized protein.	0.436
HCAG_03214	HCAG_06696	A6R0Q7	A6R8Q5	Uncharacterized protein.	CCHC-type domain-containing protein.	0.441
HCAG_03214	HCAG_07044	A6R0Q7	A6RBN6	Uncharacterized protein.	Uncharacterized protein.	0.459
HCAG_04415	HCAG_07026	A6R457	A6RBL8	Uncharacterized protein.	Uncharacterized protein.	0.454
HCAG_06696	HCAG_03214	A6R8Q5	A6R0Q7	CCHC-type domain-containing protein.	Uncharacterized protein.	0.441
HCAG_07026	HCAG_02056	A6RBL8	A6QXE9	Uncharacterized protein.	Uncharacterized protein.	0.436
HCAG_07026	HCAG_04415	A6RBL8	A6R457	Uncharacterized protein.	Uncharacterized protein.	0.454
HCAG_07044	HCAG_03214	A6RBN6	A6R0Q7	Uncharacterized protein.	Uncharacterized protein.	0.459