(35 nodes) ABC transporter-like, ATP-binding domain network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00092	Uncharacterized protein. (1014 aa)
	HCAG_00656	Uncharacterized protein. (1677 aa)
	HCAG_00970	ABC transporter domain-containing protein. (1290 aa)
	HCAG_01286	ABC transporter domain-containing protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (770 aa)
	HCAG_01333	ABC transporter domain-containing protein. (258 aa)
	HCAG_02177	Uncharacterized protein. (651 aa)
	HCAG_02904	ATP-binding cassette sub-family F member 2. (627 aa)
	HCAG_02984	Metal resistance protein YCF1. (852 aa)
	HCAG_02985	Metal resistance protein YCF1. (439 aa)
	HCAG_03004	Multidrug resistance protein 4. (283 aa)
	HCAG_03005	Multidrug resistance protein 4. (1016 aa)
	HCAG_03381	ATP-binding cassette sub-family E member 1. (638 aa)
	HCAG_03993	Elongation factor 3. (1072 aa)
	HCAG_04328	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1439 aa)
	HCAG_04451	ABC transporter domain-containing protein. (550 aa)
	HCAG_04551	Uncharacterized protein. (616 aa)
	HCAG_04818	ABC transporter domain-containing protein. (675 aa)
	HCAG_05088	mRNA export factor elf1. (1103 aa)
	HCAG_05259	Transporter ATM1, mitochondrial. (747 aa)
	HCAG_05437	ABC transporter domain-containing protein. (446 aa)
	HCAG_05438	ABC transporter domain-containing protein. (573 aa)
	HCAG_06877	ABC transporter domain-containing protein. (267 aa)
	HCAG_06237	Uncharacterized protein. (1472 aa)
	HCAG_07067	ABC transporter domain-containing protein. (445 aa)
	HCAG_07068	Uncharacterized protein. (441 aa)
	HCAG_07183	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1248 aa)
	HCAG_07190	Uncharacterized protein. (857 aa)
	HCAG_07802	ABC transporter domain-containing protein. (1037 aa)
	HCAG_07845	Uncharacterized protein. (1332 aa)
	HCAG_08257	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1560 aa)
	HCAG_08314	Uncharacterized protein. (1306 aa)
	HCAG_08360	Uncharacterized protein. (796 aa)
	HCAG_08446	Uncharacterized protein. (626 aa)
	HCAG_08933	Uncharacterized protein. (751 aa)
	HCAG_08953	Multidrug resistance protein 3. (788 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00656	HCAG_03993	A6QTF0	A6R2Y5	Uncharacterized protein.	Elongation factor 3.	0.554
HCAG_00656	HCAG_04451	A6QTF0	A6R493	Uncharacterized protein.	ABC transporter domain-containing protein.	0.408
HCAG_00656	HCAG_05088	A6QTF0	A6R630	Uncharacterized protein.	mRNA export factor elf1.	0.458
HCAG_00656	HCAG_07802	A6QTF0	A6RDU4	Uncharacterized protein.	ABC transporter domain-containing protein.	0.408
HCAG_00970	HCAG_01286	A6QUB4	A6QV79	ABC transporter domain-containing protein.	ABC transporter domain-containing protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily.	0.904
HCAG_00970	HCAG_04328	A6QUB4	A6R3X0	ABC transporter domain-containing protein.	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily.	0.902
HCAG_01286	HCAG_00970	A6QV79	A6QUB4	ABC transporter domain-containing protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily.	ABC transporter domain-containing protein.	0.904
HCAG_01286	HCAG_04328	A6QV79	A6R3X0	ABC transporter domain-containing protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily.	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily.	0.902
HCAG_01333	HCAG_02985	A6QVC6	A6R028	ABC transporter domain-containing protein.	Metal resistance protein YCF1.	0.909
HCAG_01333	HCAG_03381	A6QVC6	A6R174	ABC transporter domain-containing protein.	ATP-binding cassette sub-family E member 1.	0.549
HCAG_01333	HCAG_05259	A6QVC6	A6R6K1	ABC transporter domain-containing protein.	Transporter ATM1, mitochondrial.	0.745
HCAG_02177	HCAG_03381	A6QXS0	A6R174	Uncharacterized protein.	ATP-binding cassette sub-family E member 1.	0.597
HCAG_02177	HCAG_03993	A6QXS0	A6R2Y5	Uncharacterized protein.	Elongation factor 3.	0.691
HCAG_02177	HCAG_05088	A6QXS0	A6R630	Uncharacterized protein.	mRNA export factor elf1.	0.750
HCAG_02904	HCAG_03381	A6QZU7	A6R174	ATP-binding cassette sub-family F member 2.	ATP-binding cassette sub-family E member 1.	0.923
HCAG_02904	HCAG_03993	A6QZU7	A6R2Y5	ATP-binding cassette sub-family F member 2.	Elongation factor 3.	0.691
HCAG_02904	HCAG_05088	A6QZU7	A6R630	ATP-binding cassette sub-family F member 2.	mRNA export factor elf1.	0.755
HCAG_02904	HCAG_05259	A6QZU7	A6R6K1	ATP-binding cassette sub-family F member 2.	Transporter ATM1, mitochondrial.	0.479
HCAG_02984	HCAG_02985	A6R027	A6R028	Metal resistance protein YCF1.	Metal resistance protein YCF1.	0.918
HCAG_02984	HCAG_03993	A6R027	A6R2Y5	Metal resistance protein YCF1.	Elongation factor 3.	0.554