(3 nodes) Transport protein particle (TRAPP) component network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_04403	Trafficking protein particle complex subunit BET3. (193 aa)
	HCAG_02546	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. (254 aa)
	HCAG_06902	Uncharacterized protein. (70 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_02546	HCAG_04403	A6QYT9	A6R445	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.	Trafficking protein particle complex subunit BET3.	0.999
HCAG_02546	HCAG_06902	A6QYT9	A6R9B1	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.	Uncharacterized protein.	0.998
HCAG_04403	HCAG_02546	A6R445	A6QYT9	Trafficking protein particle complex subunit BET3.	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.	0.999
HCAG_04403	HCAG_06902	A6R445	A6R9B1	Trafficking protein particle complex subunit BET3.	Uncharacterized protein.	0.999
HCAG_06902	HCAG_02546	A6R9B1	A6QYT9	Uncharacterized protein.	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.	0.998
HCAG_06902	HCAG_04403	A6R9B1	A6R445	Uncharacterized protein.	Trafficking protein particle complex subunit BET3.	0.999