(13 nodes) DnaJ domain, conserved site network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00024	J domain-containing protein. (330 aa)
	HCAG_00161	J domain-containing protein. (421 aa)
	HCAG_00176	Uncharacterized protein. (430 aa)
	HCAG_00464	J domain-containing protein. (708 aa)
	HCAG_02577	J domain-containing protein. (428 aa)
	HCAG_03533	Uncharacterized protein. (604 aa)
	HCAG_05568	J domain-containing protein. (352 aa)
	HCAG_06744	J domain-containing protein. (1052 aa)
	HCAG_05948	J domain-containing protein. (331 aa)
	HCAG_07567	J domain-containing protein. (445 aa)
	HCAG_07921	J domain-containing protein. (473 aa)
	HCAG_08383	J domain-containing protein. (365 aa)
	HCAG_08695	J domain-containing protein. (607 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00024	HCAG_03533	A6QRL8	A6R1M5	J domain-containing protein.	Uncharacterized protein.	0.413
HCAG_00024	HCAG_07567	A6QRL8	A6RD59	J domain-containing protein.	J domain-containing protein.	0.404
HCAG_03533	HCAG_00024	A6R1M5	A6QRL8	Uncharacterized protein.	J domain-containing protein.	0.413
HCAG_03533	HCAG_07567	A6R1M5	A6RD59	Uncharacterized protein.	J domain-containing protein.	0.456
HCAG_03533	HCAG_08383	A6R1M5	A6RFG7	Uncharacterized protein.	J domain-containing protein.	0.490
HCAG_05568	HCAG_07567	A6R7G0	A6RD59	J domain-containing protein.	J domain-containing protein.	0.556
HCAG_07567	HCAG_00024	A6RD59	A6QRL8	J domain-containing protein.	J domain-containing protein.	0.404
HCAG_07567	HCAG_03533	A6RD59	A6R1M5	J domain-containing protein.	Uncharacterized protein.	0.456
HCAG_07567	HCAG_05568	A6RD59	A6R7G0	J domain-containing protein.	J domain-containing protein.	0.556
HCAG_07567	HCAG_08383	A6RD59	A6RFG7	J domain-containing protein.	J domain-containing protein.	0.495
HCAG_08383	HCAG_03533	A6RFG7	A6R1M5	J domain-containing protein.	Uncharacterized protein.	0.490
HCAG_08383	HCAG_07567	A6RFG7	A6RD59	J domain-containing protein.	J domain-containing protein.	0.495