(23 nodes) Nonhomologous End-Joining (NHEJ) network (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCAG_00075	Uncharacterized protein. (456 aa)
	HCAG_01293	Uncharacterized protein. (177 aa)
	HCAG_01370	Uncharacterized protein. (192 aa)
	HCAG_02128	Uncharacterized protein. (583 aa)
	HCAG_02498	Uncharacterized protein. (433 aa)
	HCAG_02499	Uncharacterized protein. (686 aa)
	HCAG_02627	DNA ligase. (972 aa)
	HCAG_03525	Histone H2B; Belongs to the histone H2B family. (138 aa)
	HCAG_03598	Uncharacterized protein. (559 aa)
	HCAG_03619	Cyclin N-terminal domain-containing protein. (395 aa)
	HCAG_04556	Uncharacterized protein. (514 aa)
	HCAG_04557	Uncharacterized protein. (77 aa)
	HCAG_05372	FHA domain-containing protein. (614 aa)
	HCAG_06344	Uncharacterized protein. (317 aa)
	HCAG_06453	Uncharacterized protein. (443 aa)
	HCAG_05800	Goodbye domain-containing protein. (1583 aa)
	HCAG_06131	Uncharacterized protein. (596 aa)
	HCAG_07310	Uncharacterized protein. (114 aa)
	HCAG_07892	Uncharacterized protein. (610 aa)
	HCAG_08255	Uncharacterized protein. (478 aa)
	HCAG_08256	Uncharacterized protein. (137 aa)
	HCAG_08485	Uncharacterized protein. (361 aa)
	HCAG_09251	Uncharacterized protein. (369 aa)

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00075	HCAG_02627	A6QRR9	A6QZ20	Uncharacterized protein.	DNA ligase.	0.507
HCAG_01293	HCAG_02627	A6QV86	A6QZ20	Uncharacterized protein.	DNA ligase.	0.507
HCAG_01370	HCAG_02627	A6QVG3	A6QZ20	Uncharacterized protein.	DNA ligase.	0.507
HCAG_02128	HCAG_02627	A6QXM1	A6QZ20	Uncharacterized protein.	DNA ligase.	0.507
HCAG_02498	HCAG_02499	A6QYP1	A6QYP2	Uncharacterized protein.	Uncharacterized protein.	0.546
HCAG_02498	HCAG_06131	A6QYP1	A6RAZ3	Uncharacterized protein.	Uncharacterized protein.	0.606
HCAG_02499	HCAG_02498	A6QYP2	A6QYP1	Uncharacterized protein.	Uncharacterized protein.	0.546
HCAG_02499	HCAG_06131	A6QYP2	A6RAZ3	Uncharacterized protein.	Uncharacterized protein.	0.606
HCAG_02627	HCAG_00075	A6QZ20	A6QRR9	DNA ligase.	Uncharacterized protein.	0.507
HCAG_02627	HCAG_01293	A6QZ20	A6QV86	DNA ligase.	Uncharacterized protein.	0.507
HCAG_02627	HCAG_01370	A6QZ20	A6QVG3	DNA ligase.	Uncharacterized protein.	0.507
HCAG_02627	HCAG_02128	A6QZ20	A6QXM1	DNA ligase.	Uncharacterized protein.	0.507
HCAG_02627	HCAG_03598	A6QZ20	A6R1U0	DNA ligase.	Uncharacterized protein.	0.715
HCAG_02627	HCAG_03619	A6QZ20	A6R1W1	DNA ligase.	Cyclin N-terminal domain-containing protein.	0.507
HCAG_02627	HCAG_04556	A6QZ20	A6R4J8	DNA ligase.	Uncharacterized protein.	0.507
HCAG_02627	HCAG_04557	A6QZ20	A6R4J9	DNA ligase.	Uncharacterized protein.	0.507
HCAG_02627	HCAG_05800	A6QZ20	A6RA12	DNA ligase.	Goodbye domain-containing protein.	0.715
HCAG_02627	HCAG_06344	A6QZ20	A6R7Q3	DNA ligase.	Uncharacterized protein.	0.507
HCAG_02627	HCAG_06453	A6QZ20	A6R812	DNA ligase.	Uncharacterized protein.	0.507
HCAG_02627	HCAG_07310	A6QZ20	A6RCF2	DNA ligase.	Uncharacterized protein.	0.759