STRINGSTRING
AB406_0156 AB406_0156 AB406_0282 AB406_0282 lolD lolD tig tig AB406_0653 AB406_0653 yidC yidC secY secY AB406_0818 AB406_0818 AB406_0819 AB406_0819 AB406_0837 AB406_0837 AB406_0838 AB406_0838 AB406_0840 AB406_0840 AB406_0917 AB406_0917 ftsY ftsY secA secA AB406_1284 AB406_1284 AB406_1325 AB406_1325 AB406_1345 AB406_1345 AB406_1347 AB406_1347 tatA tatA AB406_1408 AB406_1408 AB406_1758 AB406_1758 secF secF ffh ffh AB406_2004 AB406_2004 AB406_2115 AB406_2115 tatC2 tatC2 AB406_2195 AB406_2195 AB406_2242 AB406_2242
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AB406_0156Hypothetical protein. (200 aa)
AB406_0282Hypothetical protein. (489 aa)
lolDLipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (221 aa)
tigTrigger factor. (444 aa)
AB406_0653S23 ribosomal protein. (43 aa)
yidCMembrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. (596 aa)
secYProtein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (459 aa)
AB406_0818Outer membrane transport energization protein exbb. (226 aa)
AB406_0819Hypothetical protein. (132 aa)
AB406_0837Outer membrane transport energization protein exbd. (182 aa)
AB406_0838Outer membrane transport energization protein exbd. (200 aa)
AB406_0840Biopolymer transport protein. (288 aa)
AB406_0917Asma family protein. (1658 aa)
ftsYSignal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). (318 aa)
secAProtein translocase subunit seca; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (1023 aa)
AB406_1284Hypothetical protein. (494 aa)
AB406_1325Preprotein translocase subunit YajC. (90 aa)
AB406_1345Hypothetical protein. (266 aa)
AB406_1347Preprotein translocase subunit TatA. (45 aa)
tatATwin-arginine translocation protein, tata/e family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (65 aa)
AB406_1408Preprotein translocase subunit SecE. (68 aa)
AB406_1758Twin-arginine translocation protein, tata/e family subunit. (113 aa)
secFPreprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. (957 aa)
ffhSignal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (454 aa)
AB406_2004Hypothetical protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (104 aa)
AB406_2115Hypothetical protein. (215 aa)
tatC2Sec-independent protein translocase protein TatCy; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (271 aa)
AB406_2195Hypothetical protein. (121 aa)
AB406_2242Hypothetical protein. (1572 aa)
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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