Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AB406_0693 | secF | AB406_0693 | AB406_1835 | Ferredoxin--NADP reductase. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.479 |
| AB406_0693 | trxA | AB406_0693 | AB406_0244 | Ferredoxin--NADP reductase. | Thioredoxin; Belongs to the thioredoxin family. | 0.563 |
| AB406_0693 | trxB | AB406_0693 | AB406_2266 | Ferredoxin--NADP reductase. | Thioredoxin reductase. | 0.908 |
| AB406_0693 | trxC | AB406_0693 | AB406_2148 | Ferredoxin--NADP reductase. | Putative thioredoxin-2. | 0.954 |
| AB406_0693 | tsaA | AB406_0693 | AB406_2146 | Ferredoxin--NADP reductase. | Putative peroxiredoxin. | 0.700 |
| AB406_0707 | resA-2 | AB406_0707 | AB406_0360 | Alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen. | Thiol-disulfide oxidoreductase ResA. | 0.582 |
| AB406_1408 | AB406_2004 | AB406_1408 | AB406_2004 | Preprotein translocase subunit SecE. | Hypothetical protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.936 |
| AB406_1408 | secA | AB406_1408 | AB406_1228 | Preprotein translocase subunit SecE. | Protein translocase subunit seca; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.977 |
| AB406_1408 | secF | AB406_1408 | AB406_1835 | Preprotein translocase subunit SecE. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.998 |
| AB406_1408 | secY | AB406_1408 | AB406_0786 | Preprotein translocase subunit SecE. | Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.992 |
| AB406_1540 | yheI | AB406_1540 | AB406_0829 | Putative ABC transporter ATP-binding protein. | Putative multidrug resistance ABC transporter ATP-binding/permease protein YheI. | 0.925 |
| AB406_2004 | AB406_1408 | AB406_2004 | AB406_1408 | Hypothetical protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Preprotein translocase subunit SecE. | 0.936 |
| AB406_2004 | secA | AB406_2004 | AB406_1228 | Hypothetical protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit seca; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.823 |
| AB406_2004 | secF | AB406_2004 | AB406_1835 | Hypothetical protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.989 |
| AB406_2004 | secY | AB406_2004 | AB406_0786 | Hypothetical protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.861 |
| ftn | tsaA | AB406_1306 | AB406_2146 | Ferritin; Iron-storage protein. | Putative peroxiredoxin. | 0.617 |
| katG | sodA | AB406_1271 | AB406_1322 | Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | Superoxide dismutase [Mn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.613 |
| resA-2 | AB406_0707 | AB406_0360 | AB406_0707 | Thiol-disulfide oxidoreductase ResA. | Alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen. | 0.582 |
| secA | AB406_1408 | AB406_1228 | AB406_1408 | Protein translocase subunit seca; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | Preprotein translocase subunit SecE. | 0.977 |
| secA | AB406_2004 | AB406_1228 | AB406_2004 | Protein translocase subunit seca; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | Hypothetical protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.823 |
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