STRINGSTRING
bcp bcp AB406_0770 AB406_0770 resA-4 resA-4 rpoA rpoA secY secY yheI yheI AB406_0834 AB406_0834 AB406_0864 AB406_0864 AB406_0872 AB406_0872 mrsA mrsA AB406_0978 AB406_0978 sodC sodC resA-5 resA-5 AB406_1224 AB406_1224 secA secA katG katG ftn ftn sodA sodA msbA msbA msbA-2 msbA-2 hepA hepA AB406_1408 AB406_1408 rpoB rpoB rpoC rpoC AB406_1540 AB406_1540 AB406_1545 AB406_1545 ribD-2 ribD-2 ndk ndk pdhC pdhC tetA tetA sucB sucB secF secF pdhC-2 pdhC-2 AB406_1934 AB406_1934 AB406_2004 AB406_2004 tsaA tsaA trxC trxC asnC asnC yfkJ yfkJ trxB trxB tpx tpx AB406_0693 AB406_0693 AB406_2268 AB406_2268 lrp lrp ctb ctb AB406_0707 AB406_0707 resA-2 resA-2 trxA trxA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
bcpPutative peroxiredoxin bcp. (149 aa)
AB406_0770Hypothetical protein. (113 aa)
resA-4Thiol-disulfide oxidoreductase ResA. (375 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (331 aa)
secYProtein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (459 aa)
yheIPutative multidrug resistance ABC transporter ATP-binding/permease protein YheI. (554 aa)
AB406_0834Hypothetical protein. (275 aa)
AB406_0864Hypothetical protein. (616 aa)
AB406_0872Hypothetical protein. (312 aa)
mrsAPeptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (209 aa)
AB406_0978Hypothetical protein. (239 aa)
sodCSuperoxide dismutase [Cu-Zn] precursor. (166 aa)
resA-5Thiol-disulfide oxidoreductase ResA. (185 aa)
AB406_1224RNA polymerase rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (107 aa)
secAProtein translocase subunit seca; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (1023 aa)
katGCatalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (740 aa)
ftnFerritin; Iron-storage protein. (168 aa)
sodASuperoxide dismutase [Mn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (198 aa)
msbALipid A export ATP-binding/permease protein MsbA. (458 aa)
msbA-2Lipid A export ATP-binding/permease protein MsbA. (590 aa)
hepAHeterocyst differentiation ATP-binding protein HepA. (595 aa)
AB406_1408Preprotein translocase subunit SecE. (68 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1224 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1422 aa)
AB406_1540Putative ABC transporter ATP-binding protein. (583 aa)
AB406_1545Membrane protein. (315 aa)
ribD-2Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (339 aa)
ndkNucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. (139 aa)
pdhCDihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex. (533 aa)
tetATetracycline resistance protein, class C. (405 aa)
sucBDihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (405 aa)
secFPreprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. (957 aa)
pdhC-2Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex. (428 aa)
AB406_1934Hypothetical protein. (205 aa)
AB406_2004Hypothetical protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (104 aa)
tsaAPutative peroxiredoxin. (210 aa)
trxCPutative thioredoxin-2. (102 aa)
asnCRegulatory protein AsnC. (156 aa)
yfkJLow molecular weight protein-tyrosine-phosphatase YfkJ. (148 aa)
trxBThioredoxin reductase. (315 aa)
tpxPutative thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. (165 aa)
AB406_0693Ferredoxin--NADP reductase. (350 aa)
AB406_2268Hypothetical protein. (410 aa)
lrpLeucine-responsive regulatory protein. (157 aa)
ctbGroup 3 truncated hemoglobin ctb. (125 aa)
AB406_0707Alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen. (474 aa)
resA-2Thiol-disulfide oxidoreductase ResA. (461 aa)
trxAThioredoxin; Belongs to the thioredoxin family. (105 aa)
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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