(10 nodes) Snf7 family, and Vps4 oligomerisation, C-terminal network (Aspergillus terreus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ATEG_06167	Charged multivesicular body protein 2a. (109 aa)
	ATEG_06135	Uncharacterized protein. (228 aa)
	ATEG_03976	Uncharacterized protein. (216 aa)
	ATEG_03264	Vacuolar sorting protein 4b; Belongs to the AAA ATPase family. (748 aa)
	ATEG_02980	Vacuolar sorting protein snf-7. (237 aa)
	ATEG_02861	Uncharacterized protein. (209 aa)
	ATEG_02549	Uncharacterized protein. (308 aa)
	ATEG_02262	Uncharacterized protein. (477 aa)
	ATEG_01545	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family. (434 aa)
	ATEG_00597	Uncharacterized protein. (220 aa)

Your Current Organism:

Aspergillus terreus

NCBI taxonomy Id: 341663
Other names: A. terreus NIH2624, Aspergillus terreus FGSC A1156, Aspergillus terreus NIH2624

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATEG_00597	ATEG_01545	Q0D0D7	Q0CXN9	Uncharacterized protein.	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	0.990
ATEG_00597	ATEG_02262	Q0D0D7	Q0CVM2	Uncharacterized protein.	Uncharacterized protein.	0.886
ATEG_00597	ATEG_02549	Q0D0D7	Q0CUT5	Uncharacterized protein.	Uncharacterized protein.	0.975
ATEG_00597	ATEG_02861	Q0D0D7	Q0CTX3	Uncharacterized protein.	Uncharacterized protein.	0.986
ATEG_00597	ATEG_02980	Q0D0D7	Q0CTK4	Uncharacterized protein.	Vacuolar sorting protein snf-7.	0.974
ATEG_00597	ATEG_03264	Q0D0D7	Q0CSS0	Uncharacterized protein.	Vacuolar sorting protein 4b; Belongs to the AAA ATPase family.	0.939
ATEG_00597	ATEG_03976	Q0D0D7	Q0CQQ8	Uncharacterized protein.	Uncharacterized protein.	0.969
ATEG_00597	ATEG_06135	Q0D0D7	Q0CJJ9	Uncharacterized protein.	Uncharacterized protein.	0.933
ATEG_00597	ATEG_06167	Q0D0D7	Q0CJG7	Uncharacterized protein.	Charged multivesicular body protein 2a.	0.942
ATEG_01545	ATEG_00597	Q0CXN9	Q0D0D7	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.990
ATEG_01545	ATEG_02262	Q0CXN9	Q0CVM2	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.844
ATEG_01545	ATEG_02549	Q0CXN9	Q0CUT5	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.997
ATEG_01545	ATEG_02861	Q0CXN9	Q0CTX3	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.995
ATEG_01545	ATEG_02980	Q0CXN9	Q0CTK4	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	Vacuolar sorting protein snf-7.	0.995
ATEG_01545	ATEG_03264	Q0CXN9	Q0CSS0	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	Vacuolar sorting protein 4b; Belongs to the AAA ATPase family.	0.700
ATEG_01545	ATEG_03976	Q0CXN9	Q0CQQ8	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.971
ATEG_01545	ATEG_06135	Q0CXN9	Q0CJJ9	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.946
ATEG_01545	ATEG_06167	Q0CXN9	Q0CJG7	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	Charged multivesicular body protein 2a.	0.994
ATEG_02262	ATEG_00597	Q0CVM2	Q0D0D7	Uncharacterized protein.	Uncharacterized protein.	0.886
ATEG_02262	ATEG_01545	Q0CVM2	Q0CXN9	Uncharacterized protein.	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	0.844