(36 nodes) Ether lipid metabolism network (Aspergillus terreus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ATEG_08973	Uncharacterized protein. (379 aa)
	ATEG_08754	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (395 aa)
	ATEG_04978	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (232 aa)
	ATEG_04913	Uncharacterized protein. (266 aa)
	ATEG_04513	Sec14 cytosolic factor. (326 aa)
	ATEG_08194	Uncharacterized protein. (280 aa)
	ATEG_07958	Uncharacterized protein. (290 aa)
	ATEG_07374	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (289 aa)
	ATEG_06961	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (555 aa)
	ATEG_06875	Uncharacterized protein. (451 aa)
	ATEG_06538	CRAL-TRIO domain-containing protein. (438 aa)
	ATEG_06366	Phospholipase. (840 aa)
	ATEG_06120	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (286 aa)
	ATEG_04050	PKD_channel domain-containing protein. (617 aa)
	ATEG_03968	Uncharacterized protein. (1205 aa)
	ATEG_03192	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (278 aa)
	MED19	Mediator of RNA polymerase II transcription subunit 19; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (409 aa)
	ATEG_02999	Uncharacterized protein. (611 aa)
	ATEG_02896	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (278 aa)
	ATEG_04490	Uncharacterized protein. (386 aa)
	ATEG_02745	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (269 aa)
	ATEG_02594	Patatin-like phospholipase domain-containing protein ATEG_02594; Probable lipid hydrolase; Belongs to the PLPL family. (715 aa)
	ATEG_02288	Phospholipase. (1092 aa)
	ATEG_01814	Uncharacterized protein. (1496 aa)
	ATEG_01261	Fungal_trans domain-containing protein. (473 aa)
	ATEG_01260	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (289 aa)
	ATEG_01134	Lysophospholipase. (809 aa)
	nudF	Nuclear distribution protein nudF; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs; Belongs to the WD repeat LIS1/nudF family. (446 aa)
	ATEG_00116	Uncharacterized protein. (359 aa)
	ATEG_09756	Uncharacterized protein. (238 aa)
	ATEG_09559	Uncharacterized protein. (410 aa)
	ATEG_09248	CRAL-TRIO domain-containing protein. (368 aa)
	ATEG_09079	Uncharacterized protein. (430 aa)
	ATEG_08972	Phospholipase. (1055 aa)
	ATEG_05353	Patatin-like phospholipase domain-containing protein; Lipid hydrolase; Belongs to the PLPL family. (747 aa)
	ATEG_10271	Uncharacterized protein. (410 aa)

Your Current Organism:

Aspergillus terreus

NCBI taxonomy Id: 341663
Other names: A. terreus NIH2624, Aspergillus terreus FGSC A1156, Aspergillus terreus NIH2624

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATEG_00116	ATEG_01134	Q0D1R8	Q0CYV0	Uncharacterized protein.	Lysophospholipase.	0.725
ATEG_00116	ATEG_01814	Q0D1R8	Q0CWX0	Uncharacterized protein.	Uncharacterized protein.	0.521
ATEG_00116	ATEG_02288	Q0D1R8	Q0CVJ6	Uncharacterized protein.	Phospholipase.	0.622
ATEG_00116	ATEG_02999	Q0D1R8	Q0CTI5	Uncharacterized protein.	Uncharacterized protein.	0.675
ATEG_00116	ATEG_03968	Q0D1R8	Q0CQR6	Uncharacterized protein.	Uncharacterized protein.	0.521
ATEG_00116	ATEG_04913	Q0D1R8	Q0CN21	Uncharacterized protein.	Uncharacterized protein.	0.521
ATEG_00116	ATEG_06366	Q0D1R8	Q0CIW8	Uncharacterized protein.	Phospholipase.	0.622
ATEG_00116	ATEG_06875	Q0D1R8	Q0CHG7	Uncharacterized protein.	Uncharacterized protein.	0.650
ATEG_00116	ATEG_06961	Q0D1R8	Q0CH81	Uncharacterized protein.	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	0.746
ATEG_00116	ATEG_08754	Q0D1R8	Q0CC30	Uncharacterized protein.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.720
ATEG_00116	ATEG_08972	Q0D1R8	Q0CBG2	Uncharacterized protein.	Phospholipase.	0.622
ATEG_00116	ATEG_08973	Q0D1R8	Q0CBG1	Uncharacterized protein.	Uncharacterized protein.	0.622
ATEG_00116	ATEG_09079	Q0D1R8	Q0CB55	Uncharacterized protein.	Uncharacterized protein.	0.650
ATEG_01134	ATEG_00116	Q0CYV0	Q0D1R8	Lysophospholipase.	Uncharacterized protein.	0.725
ATEG_01134	ATEG_02288	Q0CYV0	Q0CVJ6	Lysophospholipase.	Phospholipase.	0.889
ATEG_01134	ATEG_02999	Q0CYV0	Q0CTI5	Lysophospholipase.	Uncharacterized protein.	0.745
ATEG_01134	ATEG_04490	Q0CYV0	Q0CP94	Lysophospholipase.	Uncharacterized protein.	0.667
ATEG_01134	ATEG_06366	Q0CYV0	Q0CIW8	Lysophospholipase.	Phospholipase.	0.889
ATEG_01134	ATEG_06961	Q0CYV0	Q0CH81	Lysophospholipase.	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	0.895
ATEG_01134	ATEG_08754	Q0CYV0	Q0CC30	Lysophospholipase.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.891