(7 nodes) Phosphopantetheine attachment site network (Mycolicibacter arupensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OQZ97187.1	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2373 aa)
	OQZ91822.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1780 aa)
	ORA00948.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2160 aa)
	ORA00491.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1816 aa)
	ORA00476.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1010 aa)
	OQZ91081.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1590 aa)
	OQZ91082.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (974 aa)

Your Current Organism:

Mycolicibacter arupensis

NCBI taxonomy Id: 342002
Other names: DSM 44942, M. arupensis, Mycobacterium arupense, Mycobacterium arupense Cloud et al. 2006, Mycolicibacter arupensis (Cloud et al. 2006) Gupta et al. 2018, strain AR30097

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OQZ91081.1	OQZ91082.1	BST15_20270	BST15_20275	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
OQZ91081.1	OQZ91822.1	BST15_20270	BST15_19590	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
OQZ91081.1	OQZ97187.1	BST15_20270	BST15_10965	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
OQZ91081.1	ORA00476.1	BST15_20270	BST15_04555	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
OQZ91081.1	ORA00491.1	BST15_20270	BST15_04550	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
OQZ91081.1	ORA00948.1	BST15_20270	BST15_01580	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
OQZ91082.1	OQZ91081.1	BST15_20275	BST15_20270	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
OQZ91082.1	OQZ91822.1	BST15_20275	BST15_19590	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
OQZ91082.1	OQZ97187.1	BST15_20275	BST15_10965	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
OQZ91082.1	ORA00476.1	BST15_20275	BST15_04555	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
OQZ91082.1	ORA00491.1	BST15_20275	BST15_04550	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
OQZ91082.1	ORA00948.1	BST15_20275	BST15_01580	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
OQZ91822.1	OQZ91081.1	BST15_19590	BST15_20270	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
OQZ91822.1	OQZ91082.1	BST15_19590	BST15_20275	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
OQZ91822.1	OQZ97187.1	BST15_19590	BST15_10965	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OQZ91822.1	ORA00476.1	BST15_19590	BST15_04555	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
OQZ91822.1	ORA00491.1	BST15_19590	BST15_04550	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OQZ91822.1	ORA00948.1	BST15_19590	BST15_01580	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OQZ97187.1	OQZ91081.1	BST15_10965	BST15_20270	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
OQZ97187.1	OQZ91082.1	BST15_10965	BST15_20275	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994

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