STRINGSTRING
calB calB gabD1 gabD1 thlA thlA pdhC_3 pdhC_3 lpd_2 lpd_2 gabD gabD EGI89_08280 EGI89_08280 LpdA LpdA LpdA-2 LpdA-2 pdhC_1 pdhC_1 lpd_1 lpd_1 sucB sucB GCA_000805695_03472 GCA_000805695_03472
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
calBUnannotated protein; Belongs to the aldehyde dehydrogenase family. (490 aa)
gabD1Unannotated protein. (457 aa)
thlAUnannotated protein; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
pdhC_3Unannotated protein. (419 aa)
lpd_2Unannotated protein. (466 aa)
gabDUnannotated protein; Belongs to the aldehyde dehydrogenase family. (509 aa)
EGI89_08280Unannotated protein. (388 aa)
LpdAUnannotated protein. (467 aa)
LpdA-2Unannotated protein. (470 aa)
pdhC_1Unannotated protein. (447 aa)
lpd_1Unannotated protein. (466 aa)
sucBUnannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (410 aa)
GCA_000805695_03472Unannotated protein. (452 aa)
Your Current Organism:
Empedobacter falsenii
NCBI taxonomy Id: 343874
Other names: CCUG 51536, CIP 108861, E. falsenii, Empedobacter falsenii (Kampfer et al. 2006) Zhang et al. 2014, Wautersiella falsenii, Wautersiella falsenii (Kampfer et al. 2006) emend. Zhang et al. 2014, strain NF 993
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