STRINGSTRING
phoB phoB phoR phoR fimZ fimZ rcsB rcsB yojN yojN narP narP ACD08710.1 ACD08710.1 ACD09349.1 ACD09349.1 uvrY uvrY sdiA sdiA rcsA rcsA ACD08558.1 ACD08558.1 phoQ phoQ phoP phoP rstA rstA rstB rstB torR torR torS torS evgA evgA evgS evgS narQ narQ barA barA arcB arcB envZ envZ ompR ompR ACD09101.1 ACD09101.1 cpxA cpxA cpxR cpxR arcA arcA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
phoBPhosphate regulon transcriptional regulatory protein PhoB; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154. (229 aa)
phoRPhosphate regulon sensor protein PhoR; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR02966. (431 aa)
fimZFimbriae Z protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. (199 aa)
rcsBCapsular synthesis regulator component B; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions. Can function both in an RcsA-dependent or RcsA-independent manner. (228 aa)
yojNSensor histidine kinase YojN; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB. (886 aa)
narPNitrate/nitrite response regulator NarP; Identified by similarity to SP:P31802; match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281. (215 aa)
ACD08710.1Heavy metal response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387. (260 aa)
ACD09349.1Heavy metal sensor histidine kinase; Member of a two-component regulatory system. (452 aa)
uvrYResponse regulator UvrY; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. (218 aa)
sdiARegulatory protein SdiA; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472. (240 aa)
rcsAColanic acid capsular biosynthesis activation protein A; Identified by match to protein family HMM PF00196. (203 aa)
ACD08558.1Identified by match to protein family HMM PF08007. (373 aa)
phoQSensor histidine kinase PhoQ; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08918. (486 aa)
phoPDNA-binding response regulator PhoP; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (223 aa)
rstATranscriptional regulatory protein RstA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (242 aa)
rstBSensor histidine kinase RstB; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (433 aa)
torRtorCAD operon transcriptional regulatory protein TorR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (230 aa)
torSSensor histidine kinase/response regulator TorS; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR02956. (914 aa)
evgAPositive transcription regulator EvgA; Identified by similarity to SP:P30854; match to protein family HMM PF00072; match to protein family HMM PF00196. (204 aa)
evgSSensor histidine kinase/response regulator EvgS; Identified by similarity to SP:P30855; match to protein family HMM PF00072; match to protein family HMM PF00497; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518. (1197 aa)
narQNitrate/nitrite sensor histidine kinase NarQ; Identified by similarity to SP:P27896; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730. (566 aa)
barASensor histidine kinase/response regulator BarA; Identified by similarity to SP:P0AEC5; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518. (918 aa)
arcBAerobic respiration control sensor protein ArcB; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (778 aa)
envZOsmolarity sensor protein EnvZ; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (450 aa)
ompRTranscriptional regulatory protein OmpR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (239 aa)
ACD09101.1Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF08281. (200 aa)
cpxASensor histidine kinase CpxA; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (457 aa)
cpxRTranscriptional regulatory protein CpxR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (232 aa)
arcAAerobic respiration control protein ArcA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (238 aa)
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.