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ACD07151.1 ACD07151.1 cyoE cyoE cyoD cyoD cyoC cyoC cyoB cyoB cyoA cyoA ydbK ydbK ACD09104.1 ACD09104.1 hcr hcr ACD09749.1 ACD09749.1 nuoN nuoN nuoM nuoM nuoL nuoL nuoK nuoK nuoJ nuoJ nuoI nuoI nuoH nuoH nuoG nuoG nuoF nuoF nuoE nuoE nuoC nuoC nuoB nuoB nuoA nuoA ACD09107.1 ACD09107.1 hyfA hyfA hyfC hyfC hyfE hyfE ACD06739.1 ACD06739.1 ACD10019.1 ACD10019.1 ACD09687.1 ACD09687.1 ACD09103.1 ACD09103.1 ACD08651.1 ACD08651.1 ACD06795.1 ACD06795.1 hycA hycA hycB hycB hycD hycD hycE hycE hycF hycF ACD06640.1 ACD06640.1 hycI hycI ACD08449.1 ACD08449.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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ACD07151.1Transporter, major facilitator family; Identified by match to protein family HMM PF07690. (454 aa)
cyoEProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (296 aa)
cyoDCytochrome o ubiquinol oxidase, subunit IV; Identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847. (109 aa)
cyoCCytochrome o ubiquinol oxidase, subunit III; Identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842. (204 aa)
cyoBCytochrome o ubiquinol oxidase, subunit I; Identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843; Belongs to the heme-copper respiratory oxidase family. (663 aa)
cyoACytochrome o ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. (315 aa)
ydbKPyruvate-flavodoxin oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. (1174 aa)
ACD09104.1MOSC domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF03473; match to protein family HMM PF03476. (369 aa)
hcrNADH oxidoreductase hcr; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970. (322 aa)
ACD09749.1NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368. (476 aa)
nuoNNADH-quinone oxidoreductase, N subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (485 aa)
nuoMNADH-quinone oxidoreductase, M subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972. (509 aa)
nuoLNADH-quinone oxidoreductase, L subunit; Identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974. (613 aa)
nuoKNADH-quinone oxidoreductase, K subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (100 aa)
nuoJNADH-quinone oxidoreductase, J subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (184 aa)
nuoINADH-quinone oxidoreductase, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (180 aa)
nuoHNADH-quinone oxidoreductase, H subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (325 aa)
nuoGNADH-quinone oxidoreductase, G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (908 aa)
nuoFNADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (445 aa)
nuoENADH-quinone oxidoreductase, E subunit; Identified by match to protein family HMM PF01257; match to protein family HMM TIGR01958. (166 aa)
nuoCNADH-quinone oxidoreductase, C/D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. (600 aa)
nuoBNADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (220 aa)
nuoANADH-quinone oxidoreductase, A subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (147 aa)
ACD09107.1NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM PF08338; match to protein family HMM TIGR01777. (297 aa)
hyfAHydrogenase-4 component A; Identified by match to protein family HMM PF00037. (205 aa)
hyfCHydrogenase-4 component C; Identified by similarity to SP:P16430; similarity to SP:P77858; match to protein family HMM PF00146. (314 aa)
hyfEHydrogenase-4 component E; Identified by match to protein family HMM PF00420. (216 aa)
ACD06739.1Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361. (517 aa)
ACD10019.1Hydrogenase-4, G subunit; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346. (571 aa)
ACD09687.1Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (179 aa)
ACD09103.1Hydrogenase-4, I subunit; Identified by match to protein family HMM PF01058. (252 aa)
ACD08651.1Formate hydrogenlyase maturation protein HycH; Identified by match to protein family HMM PF07450. (137 aa)
ACD06795.14Fe-4S binding domain protein; Identified by match to protein family HMM PF00037. (86 aa)
hycAFormate hydrogenlyase regulatory protein HycA; Identified by similarity to SP:P16427. (153 aa)
hycBFormate hydrogenlyase, subunit B; Identified by match to protein family HMM PF00037. (203 aa)
hycDFormate hydrogenlyase, subunit D; Identified by match to protein family HMM PF00146. (307 aa)
hycEFormate hydrogenlyase, subunit E; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346. (569 aa)
hycFFormate hydrogenlyase, subunit F; Identified by match to protein family HMM PF00037. (180 aa)
ACD06640.1Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450. (136 aa)
hycIHydrogenase maturation peptidase HycI; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00142. (156 aa)
ACD08449.1NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01370. (211 aa)
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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