11 items (Shigella boydii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Others

textmining

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protein homology

Your Input:
	hyfC	Hydrogenase-4 component C; Identified by similarity to SP:P16430; similarity to SP:P77858; match to protein family HMM PF00146. (314 aa)
	hyfE	Hydrogenase-4 component E; Identified by match to protein family HMM PF00420. (216 aa)
	ACD06739.1	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361. (517 aa)
	ACD10019.1	Hydrogenase-4, G subunit; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346. (571 aa)
	ACD09687.1	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (179 aa)
	ACD09103.1	Hydrogenase-4, I subunit; Identified by match to protein family HMM PF01058. (252 aa)
	ACD08651.1	Formate hydrogenlyase maturation protein HycH; Identified by match to protein family HMM PF07450. (137 aa)
	hycD	Formate hydrogenlyase, subunit D; Identified by match to protein family HMM PF00146. (307 aa)
	hycE	Formate hydrogenlyase, subunit E; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346. (569 aa)
	ACD06640.1	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450. (136 aa)
	hycI	Hydrogenase maturation peptidase HycI; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00142. (156 aa)

Your Current Organism:

Shigella boydii

NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACD06640.1	ACD06739.1	SbBS512_E3158	SbBS512_E2858	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450.	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	0.501
ACD06640.1	ACD09103.1	SbBS512_E3158	SbBS512_E2861	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450.	Hydrogenase-4, I subunit; Identified by match to protein family HMM PF01058.	0.800
ACD06640.1	ACD09687.1	SbBS512_E3158	SbBS512_E2860	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.	0.656
ACD06640.1	ACD10019.1	SbBS512_E3158	SbBS512_E2859	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450.	Hydrogenase-4, G subunit; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346.	0.844
ACD06640.1	hycD	SbBS512_E3158	SbBS512_E3154	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450.	Formate hydrogenlyase, subunit D; Identified by match to protein family HMM PF00146.	0.789
ACD06640.1	hycE	SbBS512_E3158	SbBS512_E3155	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450.	Formate hydrogenlyase, subunit E; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346.	0.847
ACD06640.1	hycI	SbBS512_E3158	SbBS512_E3159	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450.	Hydrogenase maturation peptidase HycI; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00142.	0.955
ACD06640.1	hyfC	SbBS512_E3158	SbBS512_E2855	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450.	Hydrogenase-4 component C; Identified by similarity to SP:P16430; similarity to SP:P77858; match to protein family HMM PF00146.	0.775
ACD06640.1	hyfE	SbBS512_E3158	SbBS512_E2857	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450.	Hydrogenase-4 component E; Identified by match to protein family HMM PF00420.	0.644
ACD06739.1	ACD06640.1	SbBS512_E2858	SbBS512_E3158	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	Formate hydrogenlyase maturation protein; Identified by match to protein family HMM PF07450.	0.501
ACD06739.1	ACD08651.1	SbBS512_E2858	SbBS512_E2862	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	Formate hydrogenlyase maturation protein HycH; Identified by match to protein family HMM PF07450.	0.931
ACD06739.1	ACD09103.1	SbBS512_E2858	SbBS512_E2861	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	Hydrogenase-4, I subunit; Identified by match to protein family HMM PF01058.	0.993
ACD06739.1	ACD09687.1	SbBS512_E2858	SbBS512_E2860	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.	0.956
ACD06739.1	ACD10019.1	SbBS512_E2858	SbBS512_E2859	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	Hydrogenase-4, G subunit; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346.	0.999
ACD06739.1	hycD	SbBS512_E2858	SbBS512_E3154	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	Formate hydrogenlyase, subunit D; Identified by match to protein family HMM PF00146.	0.945
ACD06739.1	hycE	SbBS512_E2858	SbBS512_E3155	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	Formate hydrogenlyase, subunit E; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346.	0.998
ACD06739.1	hycI	SbBS512_E2858	SbBS512_E3159	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	Hydrogenase maturation peptidase HycI; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00142.	0.665
ACD06739.1	hyfC	SbBS512_E2858	SbBS512_E2855	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	Hydrogenase-4 component C; Identified by similarity to SP:P16430; similarity to SP:P77858; match to protein family HMM PF00146.	0.946
ACD06739.1	hyfE	SbBS512_E2858	SbBS512_E2857	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	Hydrogenase-4 component E; Identified by match to protein family HMM PF00420.	0.973
ACD08651.1	ACD06739.1	SbBS512_E2862	SbBS512_E2858	Formate hydrogenlyase maturation protein HycH; Identified by match to protein family HMM PF07450.	Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361.	0.931

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