STRINGSTRING
araD araD araA araA araB araB ACD07170.1 ACD07170.1 ACD06560.1 ACD06560.1 ACD10342.1 ACD10342.1 ACD09618.1 ACD09618.1 ACD09368.1 ACD09368.1 ACD08689.1 ACD08689.1 ACD08144.1 ACD08144.1 ACD07596.1 ACD07596.1 trpS trpS gph gph dam dam ulaG ulaG ulaB ulaB ulaC ulaC ulaD ulaD ulaE ulaE ulaF ulaF ACD08650.1 ACD08650.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
araDL-ribulose-5-phosphate 4-epimerase; Involved in the degradation of L-arabinose. Catalyzes the interconversion of L-ribulose 5-phosphate (LRu5P) and D-xylulose 5- phosphate (D-Xu5P) via a retroaldol/aldol mechanism (carbon-carbon bond cleavage analogous to a class II aldolase reaction). (231 aa)
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (500 aa)
araBL-ribulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01234. (566 aa)
ACD07170.1Conserved hypothetical protein. (361 aa)
ACD06560.1IS4 transposase; Identified by match to protein family HMM PF01609. (448 aa)
ACD10342.1Conserved hypothetical protein. (117 aa)
ACD09618.1Identified by match to protein family HMM PF02126. (292 aa)
ACD09368.1Metalloenzyme domain protein; Identified by match to protein family HMM PF01676; match to protein family HMM PF08342. (408 aa)
ACD08689.1Alanine racemase family; Identified by match to protein family HMM PF01168. (387 aa)
ACD08144.1Conserved hypothetical protein. (120 aa)
ACD07596.1Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SF3196. (301 aa)
trpStryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (334 aa)
gphPhosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. (252 aa)
damDNA adenine methylase; Identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571. (278 aa)
ulaGPutative L-ascorbate-6-phosphate lactonase ulaG; Probably catalyzes the hydrolysis of L-ascorbate-6-P into 3- keto-L-gulonate-6-P. Is essential for L-ascorbate utilization under anaerobic conditions; Belongs to the UlaG family. (354 aa)
ulaBAscorbate-specific phosphotransferase enzyme IIB component; Identified by match to protein family HMM PF02302. (101 aa)
ulaCAscorbate-specific phosphotransferase enzyme IIA component; Identified by match to protein family HMM PF00359. (154 aa)
ulaDOrotidine 5'-phosphate decarboxylase / HUMPS family; Catalyzes the decarboxylation of 3-keto-L-gulonate-6-P into L-xylulose-5-P. Is involved in the anaerobic L-ascorbate utilization. Belongs to the HPS/KGPDC family. KGPDC subfamily. (216 aa)
ulaEL-ribulose-5-phosphate 3-epimerase; Catalyzes the isomerization of L-xylulose-5-phosphate to L- ribulose-5-phosphate. Is involved in the anaerobic L-ascorbate utilization; Belongs to the L-ribulose-5-phosphate 3-epimerase family. (284 aa)
ulaFL-ribulose-5-phosphate 4-epimerase; Catalyzes the isomerization of L-ribulose 5-phosphate to D- xylulose 5-phosphate. Is involved in the anaerobic L-ascorbate utilization. (228 aa)
ACD08650.1Inner membrane protein YagU; Identified by match to protein family HMM PF07274. (183 aa)
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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