(19 nodes) Arginine and proline metabolism, and Orn/Lys/Arg decarboxylase, C-terminal network (Shigella boydii)

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	speD	S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily. (264 aa)
	speE	Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. (288 aa)
	ldcC1	Lysine decarboxylase, constitutive; Identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711. (713 aa)
	astE	Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily. (322 aa)
	astB	Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2). (453 aa)
	ACD10014.1	Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (398 aa)
	astD	Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. (492 aa)
	astA	Arginine N-succinyltransferase; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine. (344 aa)
	astC	Succinylornithine transaminase; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily. (406 aa)
	ACD07216.1	Hypothetical protein; Identified by glimmer; putative. (56 aa)
	ACD09801.1	Putative membrane protein; Identified by match to protein family HMM PF09335. (192 aa)
	ACD10329.1	IS1 transposase orfA. (63 aa)
	ACD10219.1	Conserved hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. (302 aa)
	speB	Agmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily. (306 aa)
	speA	Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (658 aa)
	ACD07516.1	Conserved hypothetical protein. (48 aa)
	ACD07707.1	Conserved hypothetical protein. (83 aa)
	ACD09708.1	Ornithine decarboxylase, constitutive; Identified by match to protein family HMM PF03711. (80 aa)
	adiA	Biodegradative arginine decarboxylase; Identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711. (756 aa)

Your Current Organism:

Shigella boydii

NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACD07216.1	ACD09801.1	SbBS512_E1996	SbBS512_E1998	Hypothetical protein; Identified by glimmer; putative.	Putative membrane protein; Identified by match to protein family HMM PF09335.	0.450
ACD07216.1	astA	SbBS512_E1996	SbBS512_E1994	Hypothetical protein; Identified by glimmer; putative.	Arginine N-succinyltransferase; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.	0.442
ACD07216.1	astB	SbBS512_E1996	SbBS512_E1991	Hypothetical protein; Identified by glimmer; putative.	Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).	0.442
ACD07216.1	astC	SbBS512_E1996	SbBS512_E1995	Hypothetical protein; Identified by glimmer; putative.	Succinylornithine transaminase; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.	0.442
ACD07216.1	astD	SbBS512_E1996	SbBS512_E1993	Hypothetical protein; Identified by glimmer; putative.	Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.	0.442
ACD07516.1	ACD07707.1	SbBS512_E3372	SbBS512_E3373	Conserved hypothetical protein.	Conserved hypothetical protein.	0.415
ACD07516.1	speA	SbBS512_E3372	SbBS512_E3371	Conserved hypothetical protein.	Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.	0.781
ACD07516.1	speB	SbBS512_E3372	SbBS512_E3370	Conserved hypothetical protein.	Agmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.	0.488
ACD07707.1	ACD07516.1	SbBS512_E3373	SbBS512_E3372	Conserved hypothetical protein.	Conserved hypothetical protein.	0.415
ACD07707.1	speA	SbBS512_E3373	SbBS512_E3371	Conserved hypothetical protein.	Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.	0.413
ACD09708.1	adiA	SbBS512_E3398	SbBS512_E4614	Ornithine decarboxylase, constitutive; Identified by match to protein family HMM PF03711.	Biodegradative arginine decarboxylase; Identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711.	0.755
ACD09708.1	ldcC1	SbBS512_E3398	SbBS512_E0179	Ornithine decarboxylase, constitutive; Identified by match to protein family HMM PF03711.	Lysine decarboxylase, constitutive; Identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711.	0.760
ACD09801.1	ACD07216.1	SbBS512_E1998	SbBS512_E1996	Putative membrane protein; Identified by match to protein family HMM PF09335.	Hypothetical protein; Identified by glimmer; putative.	0.450
ACD09801.1	ACD10329.1	SbBS512_E1998	SbBS512_E1999	Putative membrane protein; Identified by match to protein family HMM PF09335.	IS1 transposase orfA.	0.634
ACD10014.1	astE	SbBS512_E1992	SbBS512_E1990	Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371.	Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.	0.468
ACD10329.1	ACD09801.1	SbBS512_E1999	SbBS512_E1998	IS1 transposase orfA.	Putative membrane protein; Identified by match to protein family HMM PF09335.	0.634
adiA	ACD09708.1	SbBS512_E4614	SbBS512_E3398	Biodegradative arginine decarboxylase; Identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711.	Ornithine decarboxylase, constitutive; Identified by match to protein family HMM PF03711.	0.755
adiA	astA	SbBS512_E4614	SbBS512_E1994	Biodegradative arginine decarboxylase; Identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711.	Arginine N-succinyltransferase; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.	0.905
adiA	speA	SbBS512_E4614	SbBS512_E3371	Biodegradative arginine decarboxylase; Identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711.	Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.	0.908
adiA	speB	SbBS512_E4614	SbBS512_E3370	Biodegradative arginine decarboxylase; Identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711.	Agmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.	0.912

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