STRINGSTRING
ACD09872.1 ACD09872.1 ACD06461.1 ACD06461.1 ACD06360.1 ACD06360.1 alaE alaE ACD09589.1 ACD09589.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACD09872.1Identified by match to protein family HMM PF00929. (823 aa)
ACD06461.1NAD dependent epimerase/dehydratase family; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993. (349 aa)
ACD06360.1Putative lipoprotein. (107 aa)
alaEPutative membrane protein; Exports L-alanine; Belongs to the AlaE exporter family. (149 aa)
ACD09589.1Putative transporter; Identified by match to protein family HMM PF00892. (321 aa)
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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