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| | ACD08556.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD10189.1 | IS1 ORF2. (62 aa) |
| | ACD07859.1 | Transposase family; Identified by match to protein family HMM PF01527. (139 aa) |
| | ACD07447.1 | IS1 OrfB; Identified by match to protein family HMM PF03400. (97 aa) |
| | ACD06733.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD09102.1 | IS911, transposase orfA; Identified by match to protein family HMM PF01527. (100 aa) |
| | ACD07109.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (398 aa) |
| | ACD08399.1 | Transposase family; Identified by match to protein family HMM PF01527. (100 aa) |
| | ACD07836.1 | IS911, transposase orfA; Identified by match to protein family HMM PF01527. (100 aa) |
| | ACD06984.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (398 aa) |
| | ACD06977.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD06957.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (125 aa) |
| | ACD06970.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | rdgC | Recombination-associated exonuclease RdgC; May be involved in recombination; Belongs to the RdgC family. (303 aa) |
| | ACD07729.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (398 aa) |
| | sbcC | Nuclease SbcCD, C subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SMC family. SbcC subfamily. (1047 aa) |
| | sbcD | Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (400 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa) |
| | ACD06865.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD07822.1 | IS4 transposase; Identified by match to protein family HMM PF01609. (448 aa) |
| | ACD06450.1 | IS1 OrfB; Identified by match to protein family HMM PF03400. (97 aa) |
| | ACD08907.1 | Transposase family; Identified by match to protein family HMM PF01527. (100 aa) |
| | ACD09263.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD07491.1 | Phage integrase; Identified by match to protein family HMM PF00589. (228 aa) |
| | ACD07960.1 | Prophage integrase; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. (413 aa) |
| | ACD09856.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (391 aa) |
| | ACD09720.1 | Transposase family; Identified by match to protein family HMM PF01527. (100 aa) |
| | ACD08848.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD06632.1 | Transposase InsN for insertion sequence element B; Identified by match to protein family HMM PF01527. (83 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (336 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (203 aa) |
| | ACD06377.1 | Site-specific recombinase, phage integrase family protein; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. (420 aa) |
| | ACD10488.1 | IS629 transposase orfA; Identified by match to protein family HMM PF01527. (108 aa) |
| | ACD08307.1 | Integrase protein. (147 aa) |
| | ACD08295.1 | IS605 family transposase orfB; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766. (402 aa) |
| | ACD07620.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (398 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (173 aa) |
| | ACD09357.1 | IS1 ORF2. (44 aa) |
| | ACD08001.1 | IS1 transposase; Identified by match to protein family HMM PF03400. (116 aa) |
| | ACD09994.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (391 aa) |
| | ACD09692.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (125 aa) |
| | ACD08327.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (326 aa) |
| | ACD06775.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (391 aa) |
| | ACD10132.1 | IS1203 transposase orfA; Identified by match to protein family HMM PF01527. (108 aa) |
| | rusA | Crossover junction endodeoxyribonuclease RusA; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family. (124 aa) |
| | ACD06892.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD09450.1 | IS911, transposase orfA; Identified by match to protein family HMM PF01527. (100 aa) |
| | ACD07912.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (164 aa) |
| | ACD10484.1 | Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF09003; Belongs to the 'phage' integrase family. (376 aa) |
| | rusA-2 | Crossover junction endodeoxyribonuclease RusA; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family. (126 aa) |
| | ACD06857.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD08586.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD07450.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (125 aa) |
| | ACD10276.1 | IS629 transposase orfA; Identified by match to protein family HMM PF01527. (108 aa) |
| | ACD08350.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (220 aa) |
| | ACD08181.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD06518.1 | Transposase (IS4 family); Identified by match to protein family HMM PF01609. (542 aa) |
| | ACD06506.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD08990.1 | Transposase family; Identified by match to protein family HMM PF01527. (87 aa) |
| | ACD10324.1 | IS4 transposase; Identified by match to protein family HMM PF01609. (448 aa) |
| | ACD07693.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (391 aa) |
| | ACD10416.1 | Integrase; Identified by match to protein family HMM PF00589. (375 aa) |
| | ACD09258.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (398 aa) |
| | ihfA | Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (99 aa) |
| | ACD09021.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD06870.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD06365.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD09596.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD10307.1 | Transposase family; Identified by match to protein family HMM PF01527. (102 aa) |
| | rusA-3 | Crossover junction endodeoxyribonuclease RusA; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family. (129 aa) |
| | ACD10085.1 | IS2 transposase orfA; Identified by match to protein family HMM PF01527. (121 aa) |
| | ACD09517.1 | IS1 protein InsB; Identified by match to protein family HMM PF03400. (195 aa) |
| | ACD08439.1 | Transposase, IS1111 family; Identified by match to protein family HMM PF02371. (339 aa) |
| | ACD08103.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD10525.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD10072.1 | IS4 transposase; Identified by match to protein family HMM PF01609. (448 aa) |
| | ACD08096.1 | Transposase (IS4 family); Identified by match to protein family HMM PF01609. (395 aa) |
| | ihfB | Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (94 aa) |
| | ACD09015.1 | Transposase family; Identified by match to protein family HMM PF01527. (78 aa) |
| | ACD09090.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD08222.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (125 aa) |
| | ACD06725.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (398 aa) |
| | ACD06830.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (391 aa) |
| | ACD08861.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (125 aa) |
| | ACD08186.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (398 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. Belongs to the RecO family. (242 aa) |
| | ACD08800.1 | IS4 ORF; Identified by match to protein family HMM PF01609. (400 aa) |
| | ACD07798.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | recN | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (553 aa) |
| | recC | Exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] (1122 aa) |
| | recB | Exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...] (1180 aa) |
| | recD | Exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] (608 aa) |
| | ACD07574.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD08346.1 | IS911, transposase orfA; Identified by match to protein family HMM PF01527. (100 aa) |
| | ACD09633.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | recA | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (353 aa) |
| | ACD07840.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD09879.1 | Putative integrase; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. (535 aa) |
| | recJ | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. (577 aa) |
| | xerD | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges t [...] (298 aa) |
| | ACD07076.1 | IS1 transposase OrfB; Identified by match to protein family HMM PF03400. (134 aa) |
| | ACD09804.1 | IS1 transposase orfA; Identified by match to protein family HMM PF03811. (91 aa) |
| | ACD06990.1 | IS4 transposase; Identified by match to protein family HMM PF01609. (448 aa) |
| | ACD07692.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD06583.1 | IS4 ORF; Identified by match to protein family HMM PF01609. (395 aa) |
| | ACD06560.1 | IS4 transposase; Identified by match to protein family HMM PF01609. (448 aa) |
| | ACD09376.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD06386.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD08298.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD06817.1 | Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (398 aa) |
| | ACD07733.1 | Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. (439 aa) |
| | recG | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (693 aa) |
| | ACD07099.1 | IS4 transposase; Identified by match to protein family HMM PF01609. (448 aa) |
| | ACD08156.1 | IS4 transposase; Identified by match to protein family HMM PF01609. (448 aa) |
| | ACD10112.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD07140.1 | IS1294, transposase; Identified by match to protein family HMM PF04986. (399 aa) |
| | xerC | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifically exchanges t [...] (298 aa) |
| | ACD09114.1 | IS1 transposase; Identified by match to protein family HMM PF03400. (131 aa) |
| | recQ | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. (609 aa) |
| | ACD07363.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD08943.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD09466.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (125 aa) |
| | ssb2 | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (171 aa) |
| | ACD08928.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD06687.1 | Transposase family; Identified by match to protein family HMM PF01527. (100 aa) |
| | ACD10155.1 | Site-specific recombinase, phage integrase family protein; Belongs to the 'phage' integrase family. (334 aa) |
| | ACD08099.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (125 aa) |
| | ACD06635.1 | Conserved domain protein; Identified by match to protein family HMM PF03400. (55 aa) |
| | ACD09306.1 | Transposase OrfA; Identified by match to protein family HMM PF01527. (102 aa) |
| | ACD07756.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD10259.1 | Site-specific recombinase, phage integrase family protein; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. (422 aa) |
| | ACD09017.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD06691.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | ACD08257.1 | IS1 transposase orfB; Identified by match to protein family HMM PF03400. (167 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (460 aa) |
