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ACD06739.1 ACD06739.1 fdoI fdoI hybC hybC hycE hycE ACD10019.1 ACD10019.1 nuoC nuoC nuoG nuoG nuoK nuoK nuoL nuoL nuoM nuoM nuoN nuoN dmsC1 dmsC1 hyaB hyaB hyaC hyaC appC appC ACD08287.1 ACD08287.1 ACD08431.1 ACD08431.1 dmsC2 dmsC2 fdnI fdnI ACD06318.1 ACD06318.1 dld dld cydA cydA cyoC cyoC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACD06739.1Hydrogenase-4, F subunit; Identified by match to protein family HMM PF00361. (517 aa)
fdoIFormate dehydrogenase-O, gamma subunit; Identified by match to protein family HMM PF01292; match to protein family HMM TIGR01583. (211 aa)
hybCHydrogenase-2, large subunit; Identified by match to protein family HMM PF00374; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (567 aa)
hycEFormate hydrogenlyase, subunit E; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346. (569 aa)
ACD10019.1Hydrogenase-4, G subunit; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346. (571 aa)
nuoCNADH-quinone oxidoreductase, C/D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. (600 aa)
nuoGNADH-quinone oxidoreductase, G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (908 aa)
nuoKNADH-quinone oxidoreductase, K subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (100 aa)
nuoLNADH-quinone oxidoreductase, L subunit; Identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974. (613 aa)
nuoMNADH-quinone oxidoreductase, M subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972. (509 aa)
nuoNNADH-quinone oxidoreductase, N subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (485 aa)
dmsC1Anaerobic dimethyl sulfoxide reductase, C subunit; Identified by match to protein family HMM PF04976. (287 aa)
hyaBNickel-dependent hydrogenase 1, large subunit; Identified by match to protein family HMM PF00374; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (597 aa)
hyaCNi/Fe-hydrogenase 1 B-type cytochrome subunit HyaC; Identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125. (235 aa)
appCCytochrome bd-II oxidase, subunit I; Identified by match to protein family HMM PF01654. (514 aa)
ACD08287.1Nickel-dependent hydrogenase b-type cytochrome subunit; Identified by match to protein family HMM PF01292. (188 aa)
ACD08431.1Nickel-dependent hydrogenase, b-type cytochrome subunit; Identified by match to protein family HMM PF01292. (261 aa)
dmsC2Anaerobic dimethyl sulfoxide reductase, C subunit; Identified by match to protein family HMM PF04976. (284 aa)
fdnIFormate dehydrogenase, gamma subunit; Identified by match to protein family HMM TIGR01583. (223 aa)
ACD06318.1Nickel-dependent hydrogenase, b-type cytochrome subunit; Identified by match to protein family HMM PF01292. (188 aa)
dldD-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family. (571 aa)
cydACytochrome d ubiquinol oxidase, subunit I; Identified by match to protein family HMM PF01654. (522 aa)
cyoCCytochrome o ubiquinol oxidase, subunit III; Identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842. (204 aa)
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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